MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:6.0 nTPM
HPA Brain:19.4 nTPM
GTEx:6.0 nTPM
FANTOM5:6.5 Scaled Tags Per Million
Pig:3.8 nTPM
Mouse:1.1 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 19.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.7
1870 Female, age 42, unknown 18.3
2411 Female, age 72, unknown 18.2
1830 Male, age 51, unknown 17.9
1833 Male, age 53, unknown 17.5
2219 Male, age 76, both hemispheres 17.5
2666 Male, age 74, left hemisphere 16.1
1827 Male, age 72, unknown 16.0
2828 Female, age 72, unknown 15.8
2019 Male, age 18, unknown 15.6
2586 Male, age 75, left hemisphere 14.5
Dorsal raphe nucleus
nTPM: 17.6
2016 Female, age 72, unknown 20.0
2750 Male, age 76, both hemispheres 18.0
1828 Male, age 53, unknown 17.0
2047 Male, age 72, unknown 16.7
2298 Female, age 72, unknown 16.4
Inferior colliculus
nTPM: 18.1
1848 Female, age 42, unknown 18.8
1890 Male, age 53, unknown 18.6
2097 Female, age 72, unknown 18.0
2849 Male, age 72, unknown 17.1
Median raphe nucleus
nTPM: 18.2
2220 Male, age 76, midline 18.2
Periaquaductal grey, anterior
nTPM: 18.2
1947 Male, age 18, unknown 20.8
1795 Male, age 51, unknown 17.6
2502 Female, age 75, unknown 16.2
Periaquaductal grey, dorsal
nTPM: 18.1
2850 Male, age 76, both hemispheres 20.1
2464 Female, age 72, unknown 18.8
1831 Male, age 72, unknown 16.9
1840 Male, age 53, unknown 16.6
Periaquaductal grey, lateral
nTPM: 19.4
2272 Male, age 74, both hemispheres 20.0
2140 Male, age 76, both hemispheres 19.6
2053 Male, age 18, unknown 18.4
Pretectal area
nTPM: 18.4
2316 Male, age 76, right hemisphere 21.2
2273 Male, age 74, both hemispheres 20.5
2825 Male, age 18, unknown 19.9
1944 Female, age 72, unknown 19.5
1815 Male, age 53, unknown 18.8
2224 Female, age 72, unknown 18.6
2407 Male, age 75, both hemispheres 17.8
1816 Male, age 51, unknown 17.4
2667 Female, age 75, unknown 16.4
2007 Male, age 72, unknown 16.0
1817 Female, age 42, unknown 15.8
Red nucleus
nTPM: 17.7
2725 Female, age 75, unknown 21.1
1954 Female, age 42, unknown 19.7
1904 Male, age 53, unknown 19.5
2823 Male, age 76, right hemisphere 19.5
2584 Male, age 75, left hemisphere 18.0
2227 Male, age 72, unknown 17.6
1865 Male, age 51, unknown 17.1
1821 Female, age 72, unknown 17.0
2769 Male, age 72, unknown 16.8
2785 Male, age 18, unknown 16.1
2503 Female, age 72, unknown 15.4
2588 Male, age 74, left hemisphere 14.9
Substantia nigra
nTPM: 17.7
2241 Male, age 72, unknown 24.4
1889 Female, age 72, unknown 18.9
2409 Female, age 72, unknown 18.2
1916 Female, age 42, unknown 18.0
1941 Male, age 53, unknown 17.5
2583 Male, age 75, right hemisphere 17.0
2699 Male, age 18, unknown 17.0
1851 Male, age 51, unknown 15.9
2590 Female, age 75, unknown 15.5
2665 Male, age 74, both hemispheres 14.5
Superior colliculus
nTPM: 17.5
2668 Female, age 75, unknown 20.3
1913 Female, age 42, unknown 19.3
1995 Male, age 72, unknown 18.6
1895 Male, age 76, right hemisphere 18.4
2087 Female, age 72, unknown 18.4
1839 Male, age 51, unknown 18.0
2261 Male, age 18, unknown 17.6
1796 Male, age 53, unknown 16.2
2587 Male, age 74, left hemisphere 14.6
2664 Male, age 75, both hemispheres 13.6
Ventral tegmental area
nTPM: 17.7
1942 Male, age 51, unknown 19.6
2410 Female, age 72, unknown 18.8
2218 Male, age 76, both hemispheres 18.7
2021 Male, age 53, unknown 17.5
1915 Female, age 42, unknown 16.6
2223 Female, age 72, unknown 15.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 6.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 6.0
Samples: 139

Max nTPM: 12.6
Min nTPM: 2.3
Std nTPM: 2.0
Median nTPM: 5.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 12.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 10.5
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 10.5
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 10.2
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 10.1
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 9.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 9.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 9.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 9.2
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 9.2
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 9.1
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 6.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 6.5
FF:10158-103A5 76 years, female 6.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 3.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 3.7
Samples: 4

Max nTPM: 4.2
Min nTPM: 3.2
Sample A Female 3.2
Sample B Female 4.0
Sample C Male 3.4
Sample D Male 4.2
Midbrain
nTPM: 3.1
Samples: 4

Max nTPM: 4.2
Min nTPM: 2.1
Sample A Female 3.3
Sample B Female 4.2
Sample C Male 2.1
Sample D Male 2.7
Periaqueductal gray
nTPM: 3.8
Samples: 3

Max nTPM: 4.2
Min nTPM: 3.2
Sample B Female 3.2
Sample C Male 4.2
Sample D Male 4.1
Superior colliculi
nTPM: 2.8
Samples: 4

Max nTPM: 3.2
Min nTPM: 2.2
Sample A Female 3.1
Sample B Female 2.6
Sample C Male 2.2
Sample D Male 3.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 1.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 1.1
Samples: 4

Max nTPM: 1.6
Min nTPM: 0.6
Sample A Male 0.8
Sample B Male 1.4
Sample C Female 1.6
Sample D Female 0.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
68445632 Antisense, RP_050113_01_A06, Mouse strain C57BL/6J (56 days, male) 0.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org