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SETDB2
HPA
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • SETDB2
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

SETDB2
Synonyms C13orf4, CLLD8, CLLL8, KMT1F
Gene descriptioni

Full gene name according to HGNC.

SET domain bifurcated histone lysine methyltransferase 2
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Enzymes
Metabolic proteins
Plasma proteins
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 13
Cytoband q14.2
Chromosome location (bp) 49444274 - 49495003
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

3
Ensembl ENSG00000136169 (version 109)
Entrez gene 83852
HGNC HGNC:20263
UniProt Q96T68 (UniProt - Evidence at protein level)
neXtProt NX_Q96T68
GeneCards SETDB2
Antibodypedia SETDB2 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Histone methyltransferase involved in left-right axis specification in early development and mitosis. Specifically trimethylates 'Lys-9' of histone H3 (H3K9me3). H3K9me3 is a specific tag for epigenetic transcriptional repression that recruits HP1 (CBX1, CBX3 and/or CBX5) proteins to methylated histones. Contributes to H3K9me3 in both the interspersed repetitive elements and centromere-associated repeats. Plays a role in chromosome condensation and segregation during mitosis.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Chromatin regulator, Developmental protein, Methyltransferase, Transferase
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Cell cycle, Cell division, Mitosis
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

Metal-binding, S-adenosyl-L-methionine, Zinc
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a member of a family of proteins that contain a methyl-CpG-binding domain (MBD) and a SET domain and function as histone methyltransferases. This protein is recruited to heterochromatin and plays a role in the regulation of chromosome segregation. This region is commonly deleted in chronic lymphocytic leukemia. Naturally-occuring readthrough transcription occurs from this gene to the downstream PHF11 (PHD finger protein 11) gene. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Mar 2016]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
SETDB2-201
ENSP00000326477
ENST00000317257
Q96T68
[Direct mapping] Histone-lysine N-methyltransferase SETDB2
Show all
Enzymes
   ENZYME proteins
   Transferases
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0000278 [mitotic cell cycle]
GO:0001947 [heart looping]
GO:0003677 [DNA binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005694 [chromosome]
GO:0005829 [cytosol]
GO:0006325 [chromatin organization]
GO:0007049 [cell cycle]
GO:0007059 [chromosome segregation]
GO:0008168 [methyltransferase activity]
GO:0008270 [zinc ion binding]
GO:0010629 [negative regulation of gene expression]
GO:0016740 [transferase activity]
GO:0018024 [histone-lysine N-methyltransferase activity]
GO:0032259 [methylation]
GO:0034968 [histone lysine methylation]
GO:0045892 [negative regulation of DNA-templated transcription]
GO:0046872 [metal ion binding]
GO:0046974 [histone H3K9 methyltransferase activity]
GO:0051301 [cell division]
GO:0051567 [histone H3-K9 methylation]
GO:0070828 [heterochromatin organization]
GO:0070986 [left/right axis specification]
GO:0090309 [positive regulation of DNA methylation-dependent heterochromatin formation]
GO:0140948 []
Show all
707 aa
80.7 kDa
No 0
SETDB2-202
ENSP00000346175
ENST00000354234
Q96T68
[Direct mapping] Histone-lysine N-methyltransferase SETDB2
Show all
Enzymes
   ENZYME proteins
   Transferases
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0000278 [mitotic cell cycle]
GO:0001947 [heart looping]
GO:0003677 [DNA binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005694 [chromosome]
GO:0005829 [cytosol]
GO:0006325 [chromatin organization]
GO:0007049 [cell cycle]
GO:0007059 [chromosome segregation]
GO:0008168 [methyltransferase activity]
GO:0008270 [zinc ion binding]
GO:0010629 [negative regulation of gene expression]
GO:0016740 [transferase activity]
GO:0018024 [histone-lysine N-methyltransferase activity]
GO:0032259 [methylation]
GO:0034968 [histone lysine methylation]
GO:0045892 [negative regulation of DNA-templated transcription]
GO:0046872 [metal ion binding]
GO:0046974 [histone H3K9 methyltransferase activity]
GO:0051301 [cell division]
GO:0051567 [histone H3-K9 methylation]
GO:0070828 [heterochromatin organization]
GO:0070986 [left/right axis specification]
GO:0090309 [positive regulation of DNA methylation-dependent heterochromatin formation]
GO:0140948 []
Show all
719 aa
81.9 kDa
No 0
SETDB2-204
ENSP00000482240
ENST00000611815
Q96T68
[Direct mapping] Histone-lysine N-methyltransferase SETDB2
Show all
A0A087WYZ9
[Direct mapping] Histone-lysine N-methyltransferase SETDB2
Show all
Enzymes
   ENZYME proteins
   Transferases
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0000278 [mitotic cell cycle]
GO:0001947 [heart looping]
GO:0003677 [DNA binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005694 [chromosome]
GO:0005829 [cytosol]
GO:0006325 [chromatin organization]
GO:0007049 [cell cycle]
GO:0007059 [chromosome segregation]
GO:0008168 [methyltransferase activity]
GO:0008270 [zinc ion binding]
GO:0010629 [negative regulation of gene expression]
GO:0016740 [transferase activity]
GO:0018024 [histone-lysine N-methyltransferase activity]
GO:0032259 [methylation]
GO:0034968 [histone lysine methylation]
GO:0045892 [negative regulation of DNA-templated transcription]
GO:0046872 [metal ion binding]
GO:0046974 [histone H3K9 methyltransferase activity]
GO:0051301 [cell division]
GO:0051567 [histone H3-K9 methylation]
GO:0070828 [heterochromatin organization]
GO:0070986 [left/right axis specification]
GO:0090309 [positive regulation of DNA methylation-dependent heterochromatin formation]
GO:0140948 []
Show all
707 aa
80.7 kDa
No 0

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