We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
GPNMB
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • GPNMB
PROTEIN SUMMARY GENE INFORMATION RNA DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

GPNMB
Synonyms HGFIN, NMB
Gene descriptioni

Full gene name according to HGNC.

Glycoprotein nmb
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Disease related genes
Human disease related genes
Plasma proteins
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane, Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 7
Cytoband p15.3
Chromosome location (bp) 23235967 - 23275108
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

4
Ensembl ENSG00000136235 (version 109)
Entrez gene 10457
HGNC HGNC:4462
UniProt Q14956 (UniProt - Evidence at protein level)
neXtProt NX_Q14956
GeneCards GPNMB
Antibodypedia GPNMB antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Could be a melanogenic enzyme.... show less
Gene summary (Entrez)i

Useful information about the gene from Entrez

The protein encoded by this gene is a type I transmembrane glycoprotein which shows homology to the pMEL17 precursor, a melanocyte-specific protein. GPNMB shows expression in the lowly metastatic human melanoma cell lines and xenografts but does not show expression in the highly metastatic cell lines. GPNMB may be involved in growth delay and reduction of metastatic potential. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
GPNMB-201
ENSP00000258733
ENST00000258733
Q14956
[Direct mapping] Transmembrane glycoprotein NMB
Show all
A0A024RA55
[Target identity:100%; Query identity:100%] Glycoprotein (Transmembrane) nmb, isoform CRA_b
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Plasma proteins
Disease related genes
Human disease related genes
   Skin diseases
   Skin and soft tissue diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0001818 [negative regulation of cytokine production]
GO:0001934 [positive regulation of protein phosphorylation]
GO:0005178 [integrin binding]
GO:0005515 [protein binding]
GO:0005768 [endosome]
GO:0005886 [plasma membrane]
GO:0007155 [cell adhesion]
GO:0007165 [signal transduction]
GO:0007267 [cell-cell signaling]
GO:0008201 [heparin binding]
GO:0008285 [negative regulation of cell population proliferation]
GO:0016020 [membrane]
GO:0030335 [positive regulation of cell migration]
GO:0031410 [cytoplasmic vesicle]
GO:0031901 [early endosome membrane]
GO:0031954 [positive regulation of protein autophosphorylation]
GO:0032720 [negative regulation of tumor necrosis factor production]
GO:0033162 [melanosome membrane]
GO:0034103 [regulation of tissue remodeling]
GO:0042056 [chemoattractant activity]
GO:0042130 [negative regulation of T cell proliferation]
GO:0045545 [syndecan binding]
GO:0045765 [regulation of angiogenesis]
GO:0048018 [receptor ligand activity]
GO:0050868 [negative regulation of T cell activation]
GO:0050918 [positive chemotaxis]
GO:0070374 [positive regulation of ERK1 and ERK2 cascade]
GO:1901215 [negative regulation of neuron death]
GO:2000134 [negative regulation of G1/S transition of mitotic cell cycle]
Show all
560 aa
62.6 kDa
Yes 1
GPNMB-202
ENSP00000371420
ENST00000381990
Q14956
[Direct mapping] Transmembrane glycoprotein NMB
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Plasma proteins
Disease related genes
Human disease related genes
   Skin diseases
   Skin and soft tissue diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0001818 [negative regulation of cytokine production]
GO:0001934 [positive regulation of protein phosphorylation]
GO:0005178 [integrin binding]
GO:0005515 [protein binding]
GO:0005768 [endosome]
GO:0005886 [plasma membrane]
GO:0007155 [cell adhesion]
GO:0007165 [signal transduction]
GO:0007267 [cell-cell signaling]
GO:0008201 [heparin binding]
GO:0008285 [negative regulation of cell population proliferation]
GO:0016020 [membrane]
GO:0030335 [positive regulation of cell migration]
GO:0031901 [early endosome membrane]
GO:0031954 [positive regulation of protein autophosphorylation]
GO:0033162 [melanosome membrane]
GO:0034103 [regulation of tissue remodeling]
GO:0042056 [chemoattractant activity]
GO:0042130 [negative regulation of T cell proliferation]
GO:0045545 [syndecan binding]
GO:0045765 [regulation of angiogenesis]
GO:0048018 [receptor ligand activity]
GO:0050868 [negative regulation of T cell activation]
GO:0050918 [positive chemotaxis]
GO:0070374 [positive regulation of ERK1 and ERK2 cascade]
GO:1901215 [negative regulation of neuron death]
GO:2000134 [negative regulation of G1/S transition of mitotic cell cycle]
Show all
572 aa
63.9 kDa
Yes 1
GPNMB-203
ENSP00000386476
ENST00000409458
Q96F58
[Direct mapping] GPNMB protein; Glycoprotein (Transmembrane) nmb; Glycoprotein (Transmembrane) nmb, isoform CRA_a; Transmembrane glycoprotein NMB; Uncharacterized protein GPNMB
Show all
   MEMSAT3 predicted membrane proteins
   Secreted proteins predicted by MDSEC
   SignalP predicted secreted proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
   DeepTMHMM predicted secreted proteins
   DeepSig predicted secreted proteins
Predicted intracellular proteins
Human disease related genes
   Skin diseases
   Skin and soft tissue diseases
Protein evidence (Ezkurdia et al 2014)
Show all
206 aa
23.9 kDa
Yes 0
GPNMB-215
ENSP00000497362
ENST00000647578
A0A3B3ISS6
[Direct mapping] Transmembrane glycoprotein NMB
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Human disease related genes
   Skin diseases
   Skin and soft tissue diseases
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0016020 [membrane]
Show all
588 aa
65.9 kDa
Yes 1

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org