We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
GPNMB
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • GPNMB
TISSUE VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:146.2 nTPM
GTEx:146.2 nTPM
FANTOM5:253.8 Scaled Tags Per Million

VAGINA - Annotated protein expression
Pending normal tissue analysis

VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

146.2
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 146.2
Samples: 156

Max nTPM: 472.4
Min nTPM: 40.5
Std nTPM: 76.3
Median nTPM: 128.0
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 472.4
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 413.3
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 392.7
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 325.2
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 306.7
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 305.6
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 304.9
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 296.0
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 287.0
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 268.7
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 268.4
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 268.0
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 267.6
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 267.0
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 266.8
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 262.8
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 260.3
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 259.5
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 258.2
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 250.4
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 243.1
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 238.0
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 234.6
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 230.6
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 223.7
GTEX-1C475-0526-SM-793AC 40-49 years, female 206.7
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 206.7
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 201.6
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 197.9
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 195.8
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 193.0
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 193.0
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 188.0
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 187.7
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 185.9
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 184.8
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 183.9
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 182.9
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 180.6
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 180.2
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 177.5
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 177.2
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 176.6
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 175.0
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 173.7
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 173.6
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 170.2
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 169.9
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 169.4
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 169.0
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 165.7
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 165.0
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 162.6
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 158.2
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 157.0
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 156.3
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 153.0
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 152.2
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 151.5
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 149.3
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 148.0
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 146.7
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 145.7
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 143.3
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 143.2
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 139.2
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 137.4
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 137.1
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 136.7
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 134.3
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 134.0
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 132.9
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 132.9
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 132.4
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 131.7
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 130.2
GTEX-QCQG-1226-SM-48U23 50-59 years, female 129.8
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 128.1
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 127.8
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 126.5
GTEX-16NPV-2526-SM-6M483 50-59 years, female 125.2
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 123.9
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 122.4
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 122.0
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 120.7
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 120.1
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 116.9
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 115.4
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 114.2
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 113.9
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 113.6
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 113.5
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 113.4
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 110.8
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 110.1
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 109.2
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 108.3
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 106.4
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 106.3
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 105.6
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 105.2
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 104.9
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 104.2
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 100.9
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 100.4
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 99.7
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 99.1
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 98.2
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 98.2
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 97.8
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 97.4
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 96.5
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 96.0
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 95.8
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 95.1
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 94.8
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 94.6
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 93.5
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 91.3
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 90.8
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 89.2
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 87.8
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 87.5
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 86.3
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 86.1
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 85.9
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 85.2
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 83.1
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 82.4
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 79.7
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 79.3
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 76.3
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 76.0
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 75.6
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 74.5
GTEX-11I78-2026-SM-5987C 50-59 years, female 73.3
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 73.2
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 72.1
GTEX-14PKU-1326-SM-6871B 40-49 years, female 71.1
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 69.7
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 68.6
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 68.1
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 65.3
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 64.5
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 62.6
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 62.5
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 60.2
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 60.1
GTEX-S341-1226-SM-4AD5S 40-49 years, female 57.9
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 56.2
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 52.5
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 49.9
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 47.9
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 43.1
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 42.2
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 40.5
Show allShow less

VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

253.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 253.8
FF:10204-103F6 68 years, female 253.8

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org