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SCN2A
HPA
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  • SCN2A
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

SCN2A
Synonyms HBSCI, HBSCII, Nav1.2, SCN2A1, SCN2A2
Gene descriptioni

Full gene name according to HGNC.

Sodium voltage-gated channel alpha subunit 2
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Disease related genes
FDA approved drug targets
Human disease related genes
Transporters
Voltage-gated ion channels
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 2
Cytoband q24.3
Chromosome location (bp) 165194993 - 165392310
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

8
Ensembl ENSG00000136531 (version 109)
Entrez gene 6326
HGNC HGNC:10588
UniProt Q99250 (UniProt - Evidence at protein level)
neXtProt NX_Q99250
GeneCards SCN2A
Antibodypedia SCN2A antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient 1, 2, 3, 4. Implicated in the regulation of hippocampal replay occurring within sharp wave ripples (SPW-R) important for memory (By similarity).... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Ion channel, Sodium channel, Voltage-gated channel
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Ion transport, Sodium transport, Transport
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

Sodium
Gene summary (Entrez)i

Useful information about the gene from Entrez

Voltage-gated sodium channels are transmembrane glycoprotein complexes composed of a large alpha subunit with four repeat domains, each of which is composed of six membrane-spanning segments, and one or more regulatory beta subunits. Voltage-gated sodium channels function in the generation and propagation of action potentials in neurons and muscle. This gene encodes one member of the sodium channel alpha subunit gene family. Allelic variants of this gene are associated with seizure disorders and autism spectrum disorder. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Nov 2016]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
SCN2A-201
ENSP00000283256
ENST00000283256
Q99250
[Direct mapping] Sodium channel protein type 2 subunit alpha
Show all
Transporters
   Transporter channels and pores
Voltage-gated ion channels
   Voltage-Gated Sodium Channels
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
Disease related genes
FDA approved drug targets
   Small molecule drugs
Human disease related genes
   Nervous system diseases
   Neurodegenerative diseases
   Epilepsy
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0001518 [voltage-gated sodium channel complex]
GO:0005216 [ion channel activity]
GO:0005244 [voltage-gated ion channel activity]
GO:0005248 [voltage-gated sodium channel activity]
GO:0005261 [cation channel activity]
GO:0005272 [sodium channel activity]
GO:0005515 [protein binding]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006814 [sodium ion transport]
GO:0007399 [nervous system development]
GO:0007613 [memory]
GO:0008627 [intrinsic apoptotic signaling pathway in response to osmotic stress]
GO:0016020 [membrane]
GO:0019228 [neuronal action potential]
GO:0030424 [axon]
GO:0033268 [node of Ranvier]
GO:0034706 [sodium channel complex]
GO:0034765 [regulation of ion transmembrane transport]
GO:0035725 [sodium ion transmembrane transport]
GO:0042552 [myelination]
GO:0051402 [neuron apoptotic process]
GO:0055085 [transmembrane transport]
GO:0071456 [cellular response to hypoxia]
GO:0086010 [membrane depolarization during action potential]
Show all
2005 aa
228 kDa
No >9
SCN2A-202
ENSP00000364586
ENST00000375437
Q99250
[Direct mapping] Sodium channel protein type 2 subunit alpha
Show all
Transporters
   Transporter channels and pores
Voltage-gated ion channels
   Voltage-Gated Sodium Channels
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
Disease related genes
FDA approved drug targets
   Small molecule drugs
Human disease related genes
   Nervous system diseases
   Neurodegenerative diseases
   Epilepsy
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0001518 [voltage-gated sodium channel complex]
GO:0005216 [ion channel activity]
GO:0005244 [voltage-gated ion channel activity]
GO:0005248 [voltage-gated sodium channel activity]
GO:0005261 [cation channel activity]
GO:0005272 [sodium channel activity]
GO:0005515 [protein binding]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006814 [sodium ion transport]
GO:0007399 [nervous system development]
GO:0007613 [memory]
GO:0008627 [intrinsic apoptotic signaling pathway in response to osmotic stress]
GO:0014704 [intercalated disc]
GO:0016020 [membrane]
GO:0019228 [neuronal action potential]
GO:0030315 [T-tubule]
GO:0030424 [axon]
GO:0033268 [node of Ranvier]
GO:0033270 [paranode region of axon]
GO:0034706 [sodium channel complex]
GO:0034765 [regulation of ion transmembrane transport]
GO:0035725 [sodium ion transmembrane transport]
GO:0042552 [myelination]
GO:0042734 [presynaptic membrane]
GO:0051402 [neuron apoptotic process]
GO:0055085 [transmembrane transport]
GO:0071456 [cellular response to hypoxia]
GO:0086010 [membrane depolarization during action potential]
GO:0098978 [glutamatergic synapse]
Show all
2005 aa
228 kDa
No >9
SCN2A-203
ENSP00000406454
ENST00000424833
F6U291
[Direct mapping] Sodium channel protein type 2 subunit alpha
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   6TM proteins predicted by MDM
Human disease related genes
   Nervous system diseases
   Neurodegenerative diseases
   Epilepsy
   DeepTMHMM predicted membrane proteins
Show all
GO:0005216 [ion channel activity]
GO:0005261 [cation channel activity]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0016020 [membrane]
GO:0034220 [ion transmembrane transport]
GO:0055085 [transmembrane transport]
GO:0098655 [cation transmembrane transport]
Show all
505 aa
57.1 kDa
No 6
SCN2A-205
ENSP00000487466
ENST00000486878
A0A0D9SGG2
[Direct mapping] Sodium channel protein type 2 subunit alpha
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   3TM proteins predicted by MDM
Human disease related genes
   Nervous system diseases
   Neurodegenerative diseases
   Epilepsy
   DeepTMHMM predicted membrane proteins
Show all
GO:0005216 [ion channel activity]
GO:0005261 [cation channel activity]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0016020 [membrane]
GO:0034220 [ion transmembrane transport]
GO:0055085 [transmembrane transport]
GO:0098655 [cation transmembrane transport]
Show all
178 aa
20.5 kDa
No 3
SCN2A-206
ENSP00000486885
ENST00000631182
Q99250
[Direct mapping] Sodium channel protein type 2 subunit alpha
Show all
Transporters
   Transporter channels and pores
Voltage-gated ion channels
   Voltage-Gated Sodium Channels
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
Disease related genes
FDA approved drug targets
   Small molecule drugs
Human disease related genes
   Nervous system diseases
   Neurodegenerative diseases
   Epilepsy
Mapped to neXtProt
   neXtProt - Evidence at protein level
   DeepTMHMM predicted membrane proteins
Show all
GO:0001518 [voltage-gated sodium channel complex]
GO:0005216 [ion channel activity]
GO:0005244 [voltage-gated ion channel activity]
GO:0005248 [voltage-gated sodium channel activity]
GO:0005261 [cation channel activity]
GO:0005272 [sodium channel activity]
GO:0005515 [protein binding]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006814 [sodium ion transport]
GO:0007399 [nervous system development]
GO:0007613 [memory]
GO:0008627 [intrinsic apoptotic signaling pathway in response to osmotic stress]
GO:0016020 [membrane]
GO:0019228 [neuronal action potential]
GO:0030424 [axon]
GO:0033268 [node of Ranvier]
GO:0034706 [sodium channel complex]
GO:0034765 [regulation of ion transmembrane transport]
GO:0035725 [sodium ion transmembrane transport]
GO:0042552 [myelination]
GO:0051402 [neuron apoptotic process]
GO:0055085 [transmembrane transport]
GO:0071456 [cellular response to hypoxia]
GO:0086010 [membrane depolarization during action potential]
Show all
2005 aa
228 kDa
No >9
SCN2A-208
ENSP00000490107
ENST00000636071
Q99250
[Direct mapping] Sodium channel protein type 2 subunit alpha
Show all
Transporters
   Transporter channels and pores
Voltage-gated ion channels
   Voltage-Gated Sodium Channels
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
Disease related genes
FDA approved drug targets
   Small molecule drugs
Human disease related genes
   Nervous system diseases
   Neurodegenerative diseases
   Epilepsy
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0001518 [voltage-gated sodium channel complex]
GO:0005216 [ion channel activity]
GO:0005244 [voltage-gated ion channel activity]
GO:0005248 [voltage-gated sodium channel activity]
GO:0005261 [cation channel activity]
GO:0005272 [sodium channel activity]
GO:0005515 [protein binding]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006814 [sodium ion transport]
GO:0007399 [nervous system development]
GO:0007613 [memory]
GO:0008627 [intrinsic apoptotic signaling pathway in response to osmotic stress]
GO:0016020 [membrane]
GO:0019228 [neuronal action potential]
GO:0030424 [axon]
GO:0033268 [node of Ranvier]
GO:0034706 [sodium channel complex]
GO:0034765 [regulation of ion transmembrane transport]
GO:0035725 [sodium ion transmembrane transport]
GO:0042552 [myelination]
GO:0051402 [neuron apoptotic process]
GO:0055085 [transmembrane transport]
GO:0071456 [cellular response to hypoxia]
GO:0086010 [membrane depolarization during action potential]
Show all
2005 aa
228 kDa
No >9
SCN2A-213
ENSP00000490849
ENST00000636985
A0A1B0GWA6
[Direct mapping] Sodium channel protein
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
Human disease related genes
   Nervous system diseases
   Neurodegenerative diseases
   Epilepsy
   DeepTMHMM predicted membrane proteins
Show all
GO:0001518 [voltage-gated sodium channel complex]
GO:0005216 [ion channel activity]
GO:0005244 [voltage-gated ion channel activity]
GO:0005248 [voltage-gated sodium channel activity]
GO:0005261 [cation channel activity]
GO:0005272 [sodium channel activity]
GO:0005515 [protein binding]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006814 [sodium ion transport]
GO:0016020 [membrane]
GO:0034220 [ion transmembrane transport]
GO:0034765 [regulation of ion transmembrane transport]
GO:0035725 [sodium ion transmembrane transport]
GO:0055085 [transmembrane transport]
GO:0098655 [cation transmembrane transport]
Show all
1873 aa
213.1 kDa
No >9
SCN2A-214
ENSP00000490866
ENST00000637266
Q99250
[Direct mapping] Sodium channel protein type 2 subunit alpha
Show all
Transporters
   Transporter channels and pores
Voltage-gated ion channels
   Voltage-Gated Sodium Channels
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
Disease related genes
FDA approved drug targets
   Small molecule drugs
Human disease related genes
   Nervous system diseases
   Neurodegenerative diseases
   Epilepsy
Mapped to neXtProt
   neXtProt - Evidence at protein level
   DeepTMHMM predicted membrane proteins
Show all
GO:0001518 [voltage-gated sodium channel complex]
GO:0005216 [ion channel activity]
GO:0005244 [voltage-gated ion channel activity]
GO:0005248 [voltage-gated sodium channel activity]
GO:0005261 [cation channel activity]
GO:0005272 [sodium channel activity]
GO:0005515 [protein binding]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006814 [sodium ion transport]
GO:0007399 [nervous system development]
GO:0007613 [memory]
GO:0008627 [intrinsic apoptotic signaling pathway in response to osmotic stress]
GO:0016020 [membrane]
GO:0019228 [neuronal action potential]
GO:0030424 [axon]
GO:0033268 [node of Ranvier]
GO:0034706 [sodium channel complex]
GO:0034765 [regulation of ion transmembrane transport]
GO:0035725 [sodium ion transmembrane transport]
GO:0042552 [myelination]
GO:0051402 [neuron apoptotic process]
GO:0055085 [transmembrane transport]
GO:0071456 [cellular response to hypoxia]
GO:0086010 [membrane depolarization during action potential]
Show all
2005 aa
228 kDa
No >9

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