MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:51.2 nTPM
HPA Brain:129.3 nTPM
GTEx:51.2 nTPM
FANTOM5:58.6 Scaled Tags Per Million
Pig:49.3 nTPM
Mouse:19.5 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 129.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 122.9
2586 Male, age 75, left hemisphere 276.7
2828 Female, age 72, unknown 131.6
2219 Male, age 76, both hemispheres 114.9
1833 Male, age 53, unknown 105.7
2019 Male, age 18, unknown 104.1
2666 Male, age 74, left hemisphere 103.5
2411 Female, age 72, unknown 102.8
1830 Male, age 51, unknown 98.5
1827 Male, age 72, unknown 97.7
1870 Female, age 42, unknown 93.1
Dorsal raphe nucleus
nTPM: 103.9
2047 Male, age 72, unknown 122.9
1828 Male, age 53, unknown 113.7
2016 Female, age 72, unknown 104.0
2298 Female, age 72, unknown 95.0
2750 Male, age 76, both hemispheres 83.8
Inferior colliculus
nTPM: 95.0
1848 Female, age 42, unknown 109.8
2849 Male, age 72, unknown 99.3
2097 Female, age 72, unknown 86.0
1890 Male, age 53, unknown 85.1
Median raphe nucleus
nTPM: 83.1
2220 Male, age 76, midline 83.1
Periaquaductal grey, anterior
nTPM: 115.5
2502 Female, age 75, unknown 119.6
1947 Male, age 18, unknown 118.1
1795 Male, age 51, unknown 108.8
Periaquaductal grey, dorsal
nTPM: 96.3
1840 Male, age 53, unknown 107.4
2464 Female, age 72, unknown 99.1
1831 Male, age 72, unknown 92.9
2850 Male, age 76, both hemispheres 85.7
Periaquaductal grey, lateral
nTPM: 80.9
2053 Male, age 18, unknown 93.1
2140 Male, age 76, both hemispheres 85.4
2272 Male, age 74, both hemispheres 64.2
Pretectal area
nTPM: 106.3
1817 Female, age 42, unknown 127.8
2407 Male, age 75, both hemispheres 125.1
2667 Female, age 75, unknown 122.0
1944 Female, age 72, unknown 118.1
1815 Male, age 53, unknown 110.6
1816 Male, age 51, unknown 106.5
2007 Male, age 72, unknown 106.3
2825 Male, age 18, unknown 100.0
2224 Female, age 72, unknown 88.1
2316 Male, age 76, right hemisphere 86.3
2273 Male, age 74, both hemispheres 78.5
Red nucleus
nTPM: 111.6
2588 Male, age 74, left hemisphere 132.2
1821 Female, age 72, unknown 128.1
2584 Male, age 75, left hemisphere 127.8
1954 Female, age 42, unknown 126.9
2503 Female, age 72, unknown 120.4
1904 Male, age 53, unknown 116.3
2227 Male, age 72, unknown 111.3
2769 Male, age 72, unknown 109.7
1865 Male, age 51, unknown 105.0
2785 Male, age 18, unknown 93.1
2725 Female, age 75, unknown 88.5
2823 Male, age 76, right hemisphere 79.4
Substantia nigra
nTPM: 129.3
1916 Female, age 42, unknown 193.7
1851 Male, age 51, unknown 155.2
2699 Male, age 18, unknown 147.2
2241 Male, age 72, unknown 135.6
2665 Male, age 74, both hemispheres 132.6
2583 Male, age 75, right hemisphere 119.7
1889 Female, age 72, unknown 114.1
1941 Male, age 53, unknown 113.4
2409 Female, age 72, unknown 95.0
2590 Female, age 75, unknown 86.2
Superior colliculus
nTPM: 113.7
2664 Male, age 75, both hemispheres 217.0
2668 Female, age 75, unknown 162.5
2087 Female, age 72, unknown 112.7
1796 Male, age 53, unknown 109.4
2261 Male, age 18, unknown 106.9
1839 Male, age 51, unknown 103.5
1995 Male, age 72, unknown 96.1
2587 Male, age 74, left hemisphere 80.7
1913 Female, age 42, unknown 78.0
1895 Male, age 76, right hemisphere 70.1
Ventral tegmental area
nTPM: 117.1
1915 Female, age 42, unknown 134.3
2410 Female, age 72, unknown 129.8
1942 Male, age 51, unknown 126.6
2021 Male, age 53, unknown 112.6
2218 Male, age 76, both hemispheres 109.3
2223 Female, age 72, unknown 90.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 51.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 51.2
Samples: 139

Max nTPM: 142.8
Min nTPM: 16.1
Std nTPM: 23.8
Median nTPM: 46.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 142.8
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 136.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 126.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 112.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 105.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 99.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 99.0
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 97.2
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 95.7
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 93.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 90.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 58.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 58.6
FF:10158-103A5 76 years, female 58.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 49.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 49.3
Samples: 4

Max nTPM: 55.5
Min nTPM: 40.4
Sample A Female 55.5
Sample B Female 40.4
Sample C Male 53.1
Sample D Male 48.2
Midbrain
nTPM: 41.2
Samples: 4

Max nTPM: 56.2
Min nTPM: 28.1
Sample A Female 28.1
Sample B Female 39.1
Sample C Male 56.2
Sample D Male 41.4
Periaqueductal gray
nTPM: 32.5
Samples: 3

Max nTPM: 36.6
Min nTPM: 26.5
Sample B Female 36.6
Sample C Male 34.5
Sample D Male 26.5
Superior colliculi
nTPM: 44.2
Samples: 4

Max nTPM: 52.6
Min nTPM: 32.5
Sample A Female 48.3
Sample B Female 32.5
Sample C Male 52.6
Sample D Male 43.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 19.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 19.5
Samples: 4

Max nTPM: 21.3
Min nTPM: 17.3
Sample A Male 19.2
Sample B Male 17.3
Sample C Female 21.3
Sample D Female 20.3

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