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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: High
Enterocytes: High
Enterocytes - Gradient: Ascending
Enterocytes - Microvilli: Not detected
Goblet cells: Not detected
Paneth cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:6181.0 nTPM
HPA:6181.0 nTPM
GTEx:778.6 nTPM
FANTOM5:23421.7 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA002198Antibody HPA073201Antibody CAB020827
Endocrine cells High--
Enterocytes High--
Enterocytes - Gradient Ascending--
Enterocytes - Microvilli Not detected--
Glandular cells -HighMedium
Goblet cells Not detected--
Paneth cells Not detected--






SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

6181.0
overview
Male, age 65
Small intestine sample 232
nTPM: 9224.5
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 6730
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 3275.6
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 5494

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

778.6
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 778.6
Samples: 187

Max nTPM: 3867.4
Min nTPM: 0.5
Std nTPM: 952.3
Median nTPM: 290.9
GTEX-111YS-1426-SM-5GID8 60-69 years, male 3867.4
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 3853.6
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 3650.9
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 3347.8
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 3246.9
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 3231.7
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 2984.6
GTEX-ZTSS-0926-SM-59865 40-49 years, male 2870.2
GTEX-14PN3-2026-SM-68729 60-69 years, female 2851.6
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 2777.1
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 2681.1
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 2584.6
GTEX-1122O-1326-SM-5H11F 60-69 years, female 2466.8
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 2431.5
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 2423.3
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 2369.5
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 2348.6
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 2245.7
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 2194.2
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 2193.3
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 2147.6
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 2109.2
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 2071.9
GTEX-144GM-1026-SM-79OKU 20-29 years, male 2069.2
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 2057.2
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 1976.7
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 1970.1
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 1953.1
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 1948.2
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 1910.2
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 1873.2
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 1833.4
GTEX-YFCO-1326-SM-664NV 40-49 years, male 1733.4
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 1722.4
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 1706.0
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 1687.1
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 1674.5
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 1666.8
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 1626.3
GTEX-13113-1226-SM-5EGHT 60-69 years, female 1599.6
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 1574.0
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 1424.2
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 1411.4
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 1390.2
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 1384.7
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 1381.0
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 1351.7
GTEX-14PK6-1626-SM-6871I 70-79 years, female 1342.2
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 1327.6
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 1307.5
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 1259.5
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 1224.5
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 1177.4
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 1116.9
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 1110.3
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 1060.8
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 1060.7
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 1051.2
GTEX-14PKU-1626-SM-6871C 40-49 years, female 1044.7
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 1029.6
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 1027.2
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 924.5
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 918.0
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 897.9
GTEX-1C475-1426-SM-793CH 40-49 years, female 896.4
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 878.5
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 841.1
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 796.3
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 739.7
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 709.3
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 679.7
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 670.2
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 652.9
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 650.9
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 639.0
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 634.2
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 612.6
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 608.2
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 572.1
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 570.9
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 567.6
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 539.9
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 513.0
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 486.7
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 485.4
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 480.3
GTEX-13O61-1326-SM-5KM31 60-69 years, male 452.8
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 430.0
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 414.5
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 414.3
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 407.2
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 395.4
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 327.3
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 290.9
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 260.2
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 230.2
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 229.3
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 208.6
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 208.2
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 201.7
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 176.7
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 176.6
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 173.9
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 151.7
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 142.7
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 138.6
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 130.6
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 126.8
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 124.7
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 121.8
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 120.7
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 120.5
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 111.8
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 102.8
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 98.8
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 87.3
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 84.4
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 82.1
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 81.9
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 80.1
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 77.3
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 68.9
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 68.8
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 67.7
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 66.3
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 63.1
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 62.3
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 57.3
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 56.0
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 53.9
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 51.0
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 50.2
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 49.8
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 48.4
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 47.0
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 46.2
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 44.1
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 42.4
GTEX-1192X-2526-SM-59868 50-59 years, male 41.3
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 38.3
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 38.1
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 35.2
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 34.6
GTEX-117YX-0326-SM-5GICL 50-59 years, male 29.3
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 26.3
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 25.3
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 24.2
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 23.4
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 22.8
GTEX-183FY-1626-SM-793D8 20-29 years, male 22.7
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 19.2
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 18.7
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 17.7
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 17.3
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 16.2
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 15.3
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 14.9
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 14.8
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 14.6
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 14.5
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 13.0
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 13.0
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 12.0
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 11.9
GTEX-13111-1426-SM-5DUW3 50-59 years, male 11.5
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 10.2
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 7.5
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 7.4
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 7.4
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 7.2
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 7.0
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 7.0
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 6.9
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 6.8
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 6.1
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 5.9
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 5.8
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 5.0
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 4.0
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 3.5
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 3.3
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 2.7
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 2.3
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 1.9
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 1.1
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 0.7
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 0.5
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

23421.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 23421.7
FF:10024-101D6 15,40,85 years, mixed 23421.7

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