MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.7 nTPM
HPA Brain:85.5 nTPM
GTEx:11.7 nTPM
FANTOM5:2.1 Scaled Tags Per Million
Pig:85.4 nTPM
Mouse:54.4 nTPM
Allen mouse:14.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 85.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 45.7
2666 Male, age 74, left hemisphere 74.2
2019 Male, age 18, unknown 71.6
1827 Male, age 72, unknown 57.7
2828 Female, age 72, unknown 57.3
2586 Male, age 75, left hemisphere 46.6
2219 Male, age 76, both hemispheres 46.1
1870 Female, age 42, unknown 28.0
2411 Female, age 72, unknown 27.1
1833 Male, age 53, unknown 25.0
1830 Male, age 51, unknown 23.8
Dorsal raphe nucleus
nTPM: 22.3
2298 Female, age 72, unknown 29.8
2750 Male, age 76, both hemispheres 22.8
1828 Male, age 53, unknown 21.3
2047 Male, age 72, unknown 19.6
2016 Female, age 72, unknown 18.0
Inferior colliculus
nTPM: 33.9
2097 Female, age 72, unknown 48.5
1890 Male, age 53, unknown 34.4
1848 Female, age 42, unknown 31.6
2849 Male, age 72, unknown 21.1
Median raphe nucleus
nTPM: 30.3
2220 Male, age 76, midline 30.3
Periaquaductal grey, anterior
nTPM: 46.1
1795 Male, age 51, unknown 70.2
2502 Female, age 75, unknown 35.9
1947 Male, age 18, unknown 32.4
Periaquaductal grey, dorsal
nTPM: 37.1
1831 Male, age 72, unknown 68.5
1840 Male, age 53, unknown 28.2
2464 Female, age 72, unknown 27.3
2850 Male, age 76, both hemispheres 24.5
Periaquaductal grey, lateral
nTPM: 26.1
2053 Male, age 18, unknown 34.9
2140 Male, age 76, both hemispheres 25.4
2272 Male, age 74, both hemispheres 17.8
Pretectal area
nTPM: 85.5
1816 Male, age 51, unknown 173.6
1944 Female, age 72, unknown 147.8
1817 Female, age 42, unknown 137.8
2007 Male, age 72, unknown 119.1
1815 Male, age 53, unknown 117.3
2667 Female, age 75, unknown 81.0
2224 Female, age 72, unknown 38.3
2273 Male, age 74, both hemispheres 35.8
2407 Male, age 75, both hemispheres 32.4
2316 Male, age 76, right hemisphere 31.0
2825 Male, age 18, unknown 26.9
Red nucleus
nTPM: 28.4
2785 Male, age 18, unknown 73.2
2584 Male, age 75, left hemisphere 39.0
1954 Female, age 42, unknown 29.3
2503 Female, age 72, unknown 26.3
2823 Male, age 76, right hemisphere 26.3
1904 Male, age 53, unknown 26.2
1821 Female, age 72, unknown 25.6
1865 Male, age 51, unknown 23.3
2227 Male, age 72, unknown 19.4
2588 Male, age 74, left hemisphere 19.4
2769 Male, age 72, unknown 19.4
2725 Female, age 75, unknown 13.2
Substantia nigra
nTPM: 43.6
1889 Female, age 72, unknown 101.0
2665 Male, age 74, both hemispheres 53.7
1916 Female, age 42, unknown 51.8
1941 Male, age 53, unknown 49.0
2583 Male, age 75, right hemisphere 41.0
2409 Female, age 72, unknown 38.0
1851 Male, age 51, unknown 35.7
2241 Male, age 72, unknown 27.0
2590 Female, age 75, unknown 22.8
2699 Male, age 18, unknown 16.1
Superior colliculus
nTPM: 71.9
2668 Female, age 75, unknown 196.4
2087 Female, age 72, unknown 115.8
2261 Male, age 18, unknown 72.7
1796 Male, age 53, unknown 68.0
1913 Female, age 42, unknown 63.6
2664 Male, age 75, both hemispheres 56.1
1995 Male, age 72, unknown 53.5
1895 Male, age 76, right hemisphere 38.0
1839 Male, age 51, unknown 31.3
2587 Male, age 74, left hemisphere 23.3
Ventral tegmental area
nTPM: 34.1
2410 Female, age 72, unknown 42.1
2218 Male, age 76, both hemispheres 39.4
1915 Female, age 42, unknown 34.4
1942 Male, age 51, unknown 32.8
2223 Female, age 72, unknown 29.5
2021 Male, age 53, unknown 26.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 11.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.7
Samples: 139

Max nTPM: 63.6
Min nTPM: 0.4
Std nTPM: 9.2
Median nTPM: 9.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 63.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 45.3
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 36.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 34.6
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 32.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 31.8
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 31.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 28.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 23.7
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 23.2
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 22.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 2.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2.1
FF:10158-103A5 76 years, female 2.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 85.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 20.7
Samples: 4

Max nTPM: 30.6
Min nTPM: 8.3
Sample A Female 28.7
Sample B Female 15.3
Sample C Male 30.6
Sample D Male 8.3
Midbrain
nTPM: 83.4
Samples: 4

Max nTPM: 259.5
Min nTPM: 11.2
Sample A Female 11.2
Sample B Female 18.7
Sample C Male 259.5
Sample D Male 44.0
Periaqueductal gray
nTPM: 20.1
Samples: 3

Max nTPM: 24.8
Min nTPM: 16.6
Sample B Female 18.9
Sample C Male 24.8
Sample D Male 16.6
Superior colliculi
nTPM: 85.4
Samples: 4

Max nTPM: 184.7
Min nTPM: 41.7
Sample A Female 41.7
Sample B Female 46.1
Sample C Male 184.7
Sample D Male 68.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 54.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 54.4
Samples: 4

Max nTPM: 59.7
Min nTPM: 50.3
Sample A Male 50.3
Sample B Male 53.1
Sample C Female 59.7
Sample D Female 54.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 14.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.0
71247614 Antisense, RP_050331_02_H08, Mouse strain C57BL/6J (56 days, male) 14.0
69257594 Antisense, RP_050331_02_H08, Mouse strain C57BL/6J (56 days, male) 12.1

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