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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:129.6 nTPM
HPA Brain:114.8 nTPM
GTEx:129.6 nTPM
FANTOM5:100.6 Scaled Tags Per Million
Pig:167.6 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

114.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 112.9
1981 Female, age 72, midline 131.4
2565 Male, age 75, midline 127.8
2048 Male, age 55, midline 109.2
2194 Female, age 79, both hemispheres 99.3
2816 Male, age 47, midline 96.9
Cervical spinal cord, dorsal horn
nTPM: 113.5
2173 Female, age 72, unknown 138.1
2296 Male, age 66, both hemispheres 117.9
2069 Male, age 47, both hemispheres 113.8
2721 Male, age 90, both hemispheres 105.7
2297 Male, age 75, both hemispheres 102.9
1877 Male, age 55, unknown 102.8
Cervical spinal cord, ventral horn
nTPM: 114.8
2809 Male, age 90, both hemispheres 136.9
2480 Male, age 75, both hemispheres 130.2
2098 Female, age 72, unknown 129.2
2068 Male, age 55, unknown 102.7
2295 Male, age 66, both hemispheres 101.0
2820 Female, age 79, both hemispheres 88.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

129.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 129.6
Samples: 159

Max nTPM: 205.6
Min nTPM: 64.0
Std nTPM: 25.6
Median nTPM: 126.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 205.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 197.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 193.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 189.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 186.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 185.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 178.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 175.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 171.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 170.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 168.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 166.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 165.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 163.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 163.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 163.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 163.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 161.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 160.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 160.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 160.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 159.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 158.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 157.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 157.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 157.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 156.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 155.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 155.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 154.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 153.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 153.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 152.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 152.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 151.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 151.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 150.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 148.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 146.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 146.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 144.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 144.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 144.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 143.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 143.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 142.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 142.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 142.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 141.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 141.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 141.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 141.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 141.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 141.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 138.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 136.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 135.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 135.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 135.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 133.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 133.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 132.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 132.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 132.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 131.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 131.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 130.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 130.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 130.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 130.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 129.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 129.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 128.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 127.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 127.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 127.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 127.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 126.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 126.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 126.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 125.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 125.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 125.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 124.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 124.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 124.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 123.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 123.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 123.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 123.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 123.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 123.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 123.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 122.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 121.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 121.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 120.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 120.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 120.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 119.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 119.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 119.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 118.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 118.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 118.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 118.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 117.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 117.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 116.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 116.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 116.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 115.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 115.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 115.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 113.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 113.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 112.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 110.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 110.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 109.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 108.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 108.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 108.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 108.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 108.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 108.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 107.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 107.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 106.8
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 106.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 106.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 106.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 106.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 106.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 103.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 103.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 103.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 102.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 102.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 102.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 99.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 98.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 97.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 97.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 97.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 96.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 96.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 94.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 94.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 94.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 94.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 93.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 93.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 90.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 88.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 84.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 80.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 79.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 64.0
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

100.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 100.6
FF:10181-103D1 60 years, female 121.8
FF:10159-103A6 76 years, female 79.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

167.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 143.2
Samples: 4

Max nTPM: 149.6
Min nTPM: 137.6
Sample A Female 137.6
Sample B Female 137.8
Sample C Male 149.6
Sample D Male 147.8
Ventral spinal cord
nTPM: 167.6
Samples: 4

Max nTPM: 175.9
Min nTPM: 156.0
Sample A Female 156.0
Sample B Female 175.9
Sample C Male 173.2
Sample D Male 165.1

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