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  • PSMB7
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:124.7 nTPM
FANTOM5:126.9 Scaled Tags Per Million
Pig:102.6 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA052408
Glial cells Medium
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

124.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 124.7
Samples: 246

Max nTPM: 266.7
Min nTPM: 70.5
Std nTPM: 32.4
Median nTPM: 119.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 266.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 257.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 239.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 235.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 228.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 210.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 208.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 204.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 199.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 191.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 191.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 190.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 189.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 187.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 186.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 185.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 183.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 180.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 173.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 171.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 170.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 169.5
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 167.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 167.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 165.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 164.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 161.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 161.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 160.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 159.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 158.9
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 157.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 155.9
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 154.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 154.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 152.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 150.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 148.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 147.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 147.3
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 146.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 145.7
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 145.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 144.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 144.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 143.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 143.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 143.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 143.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 142.4
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 142.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 141.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 141.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 140.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 139.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 139.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 139.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 138.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 138.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 138.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 137.9
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 137.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 137.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 137.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 136.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 136.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 136.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 136.2
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 135.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 135.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 134.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 134.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 134.0
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 133.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 133.5
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 132.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 132.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 132.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 131.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 131.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 131.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 131.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 131.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 131.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 130.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 130.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 130.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 129.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 129.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 129.3
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 129.3
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 129.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 128.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 128.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 127.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 127.3
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 126.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 126.6
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 125.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 125.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 125.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 125.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 125.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 125.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 125.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 124.6
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 124.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 124.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 122.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 122.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 122.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 122.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 121.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 121.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 121.2
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 121.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 121.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 120.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 120.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 120.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 120.1
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 120.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 119.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 119.5
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 119.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 118.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 118.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 118.4
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 118.3
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 118.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 118.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 117.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 117.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 117.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 117.2
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 117.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 116.5
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 116.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 116.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 115.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 115.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 115.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 114.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 114.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 114.4
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 114.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 113.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 113.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 113.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 112.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 112.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 112.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 112.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 111.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 111.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 111.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 110.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 110.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 110.6
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 110.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 110.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 109.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 109.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 109.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 109.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 109.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 109.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 108.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 108.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 107.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 107.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 107.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 107.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 106.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 106.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 106.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 106.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 105.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 105.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 104.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 104.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 104.1
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 103.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 103.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 102.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 102.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 102.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 102.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 101.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 101.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 101.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 101.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 100.6
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 100.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 100.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 99.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 99.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 98.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 98.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 97.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 97.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 97.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 97.4
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 97.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 97.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 97.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 96.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 96.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 95.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 95.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 94.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 94.7
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 93.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 93.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 92.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 92.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 91.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 91.4
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 90.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 89.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 88.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 87.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 87.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 87.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 86.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 86.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 86.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 86.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 85.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 85.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 85.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 84.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 84.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 83.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 82.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 82.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 82.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 82.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 81.9
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 79.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 77.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 77.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 76.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 74.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 73.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 70.5
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

126.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 126.9
FF:10164-103B2 76 years, female 126.9

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

102.6
Pig sample Sample description nTPM
Caudate
nTPM: 102.6
Samples: 4

Max nTPM: 123.3
Min nTPM: 86.3
Sample A Female 103.1
Sample B Female 97.6
Sample C Male 123.3
Sample D Male 86.3

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