MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:130.8 nTPM
HPA Brain:133.1 nTPM
GTEx:130.8 nTPM
FANTOM5:105.4 Scaled Tags Per Million
Pig:141.2 nTPM
Mouse:283.0 nTPM
Allen mouse:10.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 133.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 110.5
2586 Male, age 75, left hemisphere 150.8
1827 Male, age 72, unknown 120.1
1870 Female, age 42, unknown 111.7
2666 Male, age 74, left hemisphere 107.8
2411 Female, age 72, unknown 107.5
2019 Male, age 18, unknown 107.2
1830 Male, age 51, unknown 104.0
2828 Female, age 72, unknown 102.5
1833 Male, age 53, unknown 100.7
2219 Male, age 76, both hemispheres 93.1
Dorsal raphe nucleus
nTPM: 120.7
2047 Male, age 72, unknown 132.4
1828 Male, age 53, unknown 126.6
2298 Female, age 72, unknown 125.1
2750 Male, age 76, both hemispheres 110.8
2016 Female, age 72, unknown 108.8
Inferior colliculus
nTPM: 107.1
2097 Female, age 72, unknown 110.0
1890 Male, age 53, unknown 106.7
1848 Female, age 42, unknown 106.5
2849 Male, age 72, unknown 105.4
Median raphe nucleus
nTPM: 109.5
2220 Male, age 76, midline 109.5
Periaquaductal grey, anterior
nTPM: 120.1
2502 Female, age 75, unknown 127.0
1947 Male, age 18, unknown 125.4
1795 Male, age 51, unknown 108.0
Periaquaductal grey, dorsal
nTPM: 101.0
1840 Male, age 53, unknown 109.1
2464 Female, age 72, unknown 107.1
2850 Male, age 76, both hemispheres 97.3
1831 Male, age 72, unknown 90.4
Periaquaductal grey, lateral
nTPM: 103.0
2053 Male, age 18, unknown 109.1
2272 Male, age 74, both hemispheres 103.7
2140 Male, age 76, both hemispheres 96.3
Pretectal area
nTPM: 111.9
1816 Male, age 51, unknown 122.1
2007 Male, age 72, unknown 120.1
1944 Female, age 72, unknown 119.7
1817 Female, age 42, unknown 117.7
2667 Female, age 75, unknown 116.8
2407 Male, age 75, both hemispheres 112.1
2273 Male, age 74, both hemispheres 110.7
2224 Female, age 72, unknown 110.1
1815 Male, age 53, unknown 108.7
2825 Male, age 18, unknown 107.7
2316 Male, age 76, right hemisphere 84.9
Red nucleus
nTPM: 105.1
1821 Female, age 72, unknown 122.9
2588 Male, age 74, left hemisphere 111.3
1865 Male, age 51, unknown 109.7
1954 Female, age 42, unknown 109.5
1904 Male, age 53, unknown 108.7
2584 Male, age 75, left hemisphere 106.3
2769 Male, age 72, unknown 102.9
2503 Female, age 72, unknown 101.6
2725 Female, age 75, unknown 99.1
2227 Male, age 72, unknown 98.6
2785 Male, age 18, unknown 98.1
2823 Male, age 76, right hemisphere 92.4
Substantia nigra
nTPM: 133.1
1916 Female, age 42, unknown 179.6
1851 Male, age 51, unknown 147.3
2241 Male, age 72, unknown 145.7
1941 Male, age 53, unknown 137.1
2699 Male, age 18, unknown 135.8
1889 Female, age 72, unknown 125.0
2665 Male, age 74, both hemispheres 123.9
2583 Male, age 75, right hemisphere 114.2
2409 Female, age 72, unknown 112.8
2590 Female, age 75, unknown 109.7
Superior colliculus
nTPM: 108.4
2664 Male, age 75, both hemispheres 125.3
2668 Female, age 75, unknown 123.2
2587 Male, age 74, left hemisphere 118.7
1796 Male, age 53, unknown 107.5
2087 Female, age 72, unknown 107.5
2261 Male, age 18, unknown 106.7
1839 Male, age 51, unknown 106.4
1895 Male, age 76, right hemisphere 98.4
1913 Female, age 42, unknown 97.9
1995 Male, age 72, unknown 92.0
Ventral tegmental area
nTPM: 119.6
1915 Female, age 42, unknown 139.9
2410 Female, age 72, unknown 129.4
2218 Male, age 76, both hemispheres 118.5
2223 Female, age 72, unknown 110.8
1942 Male, age 51, unknown 110.0
2021 Male, age 53, unknown 108.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 130.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 130.8
Samples: 139

Max nTPM: 271.0
Min nTPM: 83.9
Std nTPM: 30.4
Median nTPM: 124.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 271.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 220.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 216.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 202.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 201.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 200.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 197.4
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 192.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 191.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 190.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 188.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 105.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 105.4
FF:10158-103A5 76 years, female 105.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 141.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 137.1
Samples: 4

Max nTPM: 173.4
Min nTPM: 109.6
Sample A Female 173.4
Sample B Female 109.6
Sample C Male 146.3
Sample D Male 119.2
Midbrain
nTPM: 141.2
Samples: 4

Max nTPM: 180.5
Min nTPM: 115.6
Sample A Female 180.5
Sample B Female 130.9
Sample C Male 137.7
Sample D Male 115.6
Periaqueductal gray
nTPM: 112.2
Samples: 3

Max nTPM: 128.3
Min nTPM: 98.0
Sample B Female 110.3
Sample C Male 128.3
Sample D Male 98.0
Superior colliculi
nTPM: 135.8
Samples: 4

Max nTPM: 152.9
Min nTPM: 103.3
Sample A Female 152.6
Sample B Female 103.3
Sample C Male 152.9
Sample D Male 134.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 283.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 283.0
Samples: 4

Max nTPM: 290.4
Min nTPM: 272.4
Sample A Male 284.4
Sample B Male 284.6
Sample C Female 272.4
Sample D Female 290.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 10.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.8
69014818 Antisense, RP_050310_01_G07, Mouse strain C57BL/6J (56 days, male) 10.8

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