MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:135.4 nTPM
HPA Brain:282.9 nTPM
GTEx:135.4 nTPM
FANTOM5:632.3 Scaled Tags Per Million
Pig:362.8 nTPM
Mouse:329.9 nTPM
Allen mouse:12.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 282.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 204.7
2411 Female, age 72, unknown 316.9
1830 Male, age 51, unknown 274.5
1833 Male, age 53, unknown 262.8
2019 Male, age 18, unknown 256.9
1870 Female, age 42, unknown 254.6
2828 Female, age 72, unknown 186.6
2219 Male, age 76, both hemispheres 163.1
1827 Male, age 72, unknown 143.7
2666 Male, age 74, left hemisphere 124.0
2586 Male, age 75, left hemisphere 63.8
Dorsal raphe nucleus
nTPM: 165.8
2750 Male, age 76, both hemispheres 351.0
2016 Female, age 72, unknown 158.1
1828 Male, age 53, unknown 139.8
2298 Female, age 72, unknown 101.5
2047 Male, age 72, unknown 78.6
Inferior colliculus
nTPM: 128.9
1890 Male, age 53, unknown 136.4
1848 Female, age 42, unknown 135.2
2097 Female, age 72, unknown 125.0
2849 Male, age 72, unknown 119.2
Median raphe nucleus
nTPM: 151.9
2220 Male, age 76, midline 151.9
Periaquaductal grey, anterior
nTPM: 130.9
1947 Male, age 18, unknown 183.9
2502 Female, age 75, unknown 126.6
1795 Male, age 51, unknown 82.3
Periaquaductal grey, dorsal
nTPM: 93.4
2464 Female, age 72, unknown 161.1
1831 Male, age 72, unknown 90.7
2850 Male, age 76, both hemispheres 70.5
1840 Male, age 53, unknown 51.4
Periaquaductal grey, lateral
nTPM: 109.5
2272 Male, age 74, both hemispheres 163.4
2053 Male, age 18, unknown 100.8
2140 Male, age 76, both hemispheres 64.4
Pretectal area
nTPM: 127.5
2316 Male, age 76, right hemisphere 197.5
1815 Male, age 53, unknown 188.6
2273 Male, age 74, both hemispheres 151.9
1817 Female, age 42, unknown 147.5
2007 Male, age 72, unknown 141.3
2407 Male, age 75, both hemispheres 125.0
2825 Male, age 18, unknown 114.0
2224 Female, age 72, unknown 109.2
2667 Female, age 75, unknown 79.2
1944 Female, age 72, unknown 76.0
1816 Male, age 51, unknown 72.7
Red nucleus
nTPM: 282.9
1821 Female, age 72, unknown 390.3
1865 Male, age 51, unknown 382.4
1904 Male, age 53, unknown 354.6
2823 Male, age 76, right hemisphere 354.5
2227 Male, age 72, unknown 289.2
2769 Male, age 72, unknown 289.0
2503 Female, age 72, unknown 286.7
1954 Female, age 42, unknown 276.8
2785 Male, age 18, unknown 272.3
2725 Female, age 75, unknown 210.0
2588 Male, age 74, left hemisphere 173.5
2584 Male, age 75, left hemisphere 115.3
Substantia nigra
nTPM: 147.4
2409 Female, age 72, unknown 213.8
2590 Female, age 75, unknown 211.1
1851 Male, age 51, unknown 178.8
1889 Female, age 72, unknown 175.3
2241 Male, age 72, unknown 156.6
2583 Male, age 75, right hemisphere 136.8
1941 Male, age 53, unknown 120.9
2699 Male, age 18, unknown 109.4
1916 Female, age 42, unknown 103.7
2665 Male, age 74, both hemispheres 67.2
Superior colliculus
nTPM: 173.9
1913 Female, age 42, unknown 261.2
1995 Male, age 72, unknown 249.7
1895 Male, age 76, right hemisphere 249.3
2587 Male, age 74, left hemisphere 221.4
2668 Female, age 75, unknown 198.1
1839 Male, age 51, unknown 175.7
1796 Male, age 53, unknown 129.5
2261 Male, age 18, unknown 104.0
2087 Female, age 72, unknown 96.7
2664 Male, age 75, both hemispheres 53.3
Ventral tegmental area
nTPM: 182.1
2223 Female, age 72, unknown 275.5
2410 Female, age 72, unknown 252.9
2218 Male, age 76, both hemispheres 158.6
1942 Male, age 51, unknown 144.1
2021 Male, age 53, unknown 134.3
1915 Female, age 42, unknown 127.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 135.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 135.4
Samples: 139

Max nTPM: 535.4
Min nTPM: 26.0
Std nTPM: 84.0
Median nTPM: 112.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 535.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 396.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 389.4
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 387.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 381.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 373.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 362.7
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 284.8
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 284.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 274.5
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 252.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 632.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 632.3
FF:10158-103A5 76 years, female 632.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 362.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 294.3
Samples: 4

Max nTPM: 486.2
Min nTPM: 208.3
Sample A Female 258.4
Sample B Female 208.3
Sample C Male 224.2
Sample D Male 486.2
Midbrain
nTPM: 302.4
Samples: 4

Max nTPM: 612.2
Min nTPM: 145.6
Sample A Female 612.2
Sample B Female 292.8
Sample C Male 145.6
Sample D Male 158.8
Periaqueductal gray
nTPM: 190.6
Samples: 3

Max nTPM: 248.4
Min nTPM: 137.2
Sample B Female 248.4
Sample C Male 137.2
Sample D Male 186.1
Superior colliculi
nTPM: 362.8
Samples: 4

Max nTPM: 748.4
Min nTPM: 210.4
Sample A Female 227.0
Sample B Female 748.4
Sample C Male 210.4
Sample D Male 265.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 329.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 329.9
Samples: 4

Max nTPM: 352.8
Min nTPM: 309.0
Sample A Male 309.0
Sample B Male 319.2
Sample C Female 352.8
Sample D Female 338.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 12.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.3
70613967 Antisense, RP_050725_01_C07, Mouse strain C57BL/6J (56 days, male) 14.9
77413700 Antisense, RP_070205_01_E04, Mouse strain C57BL/6J (56 days, male) 12.4
532631 Antisense, RP_040810_02_G06, Mouse strain C57BL/6J (56 days, male) 9.5

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