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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:411.7 nTPM
FANTOM5:450.5 Scaled Tags Per Million
Pig:166.2 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA043640Antibody HPA046280
Glial cells Not detectedLow
Neuronal cells Not detectedLow





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

411.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 411.7
Samples: 246

Max nTPM: 1659.6
Min nTPM: 48.3
Std nTPM: 234.9
Median nTPM: 354.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 1659.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 1479.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 1143.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 1096.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 1014.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 961.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 955.4
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 935.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 925.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 918.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 913.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 870.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 844.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 828.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 820.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 818.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 804.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 799.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 774.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 768.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 761.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 761.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 744.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 732.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 728.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 718.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 708.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 707.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 701.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 694.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 677.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 668.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 649.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 649.5
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 649.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 648.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 641.1
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 639.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 635.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 609.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 608.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 605.5
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 604.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 602.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 583.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 575.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 574.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 564.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 562.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 559.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 555.8
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 555.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 545.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 537.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 537.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 535.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 532.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 531.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 525.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 523.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 523.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 522.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 520.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 514.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 513.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 511.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 505.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 497.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 495.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 492.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 489.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 486.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 481.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 481.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 478.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 472.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 470.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 468.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 466.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 466.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 462.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 453.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 450.5
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 447.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 444.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 439.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 435.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 434.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 434.3
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 427.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 424.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 422.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 414.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 414.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 412.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 410.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 408.9
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 404.5
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 401.2
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 400.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 397.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 397.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 395.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 395.2
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 390.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 390.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 389.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 386.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 378.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 377.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 376.3
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 374.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 371.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 371.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 369.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 366.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 365.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 363.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 362.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 360.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 360.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 356.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 354.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 354.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 353.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 353.4
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 352.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 350.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 349.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 343.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 343.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 337.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 336.7
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 336.5
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 336.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 333.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 332.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 329.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 326.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 325.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 325.5
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 325.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 323.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 322.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 322.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 322.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 321.6
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 319.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 319.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 317.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 315.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 315.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 311.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 309.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 307.6
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 306.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 306.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 305.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 304.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 304.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 303.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 302.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 301.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 295.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 295.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 291.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 289.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 288.5
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 279.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 279.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 276.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 275.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 275.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 274.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 273.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 271.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 269.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 266.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 265.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 265.0
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 262.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 261.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 255.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 250.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 248.5
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 246.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 245.7
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 242.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 239.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 237.6
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 235.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 233.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 232.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 232.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 231.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 231.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 231.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 229.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 226.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 225.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 225.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 222.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 217.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 215.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 213.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 211.3
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 210.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 209.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 207.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 205.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 204.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 203.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 199.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 199.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 197.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 196.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 194.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 192.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 189.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 184.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 183.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 183.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 181.8
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 181.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 179.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 166.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 165.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 161.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 152.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 142.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 138.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 137.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 131.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 128.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 124.1
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 115.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 111.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 106.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 103.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 85.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 84.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 83.1
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 80.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 69.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 60.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 48.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

450.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 450.5
FF:10164-103B2 76 years, female 450.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

166.2
Pig sample Sample description nTPM
Caudate
nTPM: 166.2
Samples: 4

Max nTPM: 251.7
Min nTPM: 119.0
Sample A Female 119.0
Sample B Female 168.6
Sample C Male 251.7
Sample D Male 125.5

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