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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:556.7 nTPM
HPA Brain:420.5 nTPM
GTEx:556.7 nTPM
FANTOM5:477.1 Scaled Tags Per Million
Pig:379.6 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

420.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 384.3
1981 Female, age 72, midline 542.1
2048 Male, age 55, midline 404.1
2816 Male, age 47, midline 374.1
2194 Female, age 79, both hemispheres 327.2
2565 Male, age 75, midline 273.7
Cervical spinal cord, dorsal horn
nTPM: 420.5
2296 Male, age 66, both hemispheres 586.4
2173 Female, age 72, unknown 554.8
2069 Male, age 47, both hemispheres 384.2
2721 Male, age 90, both hemispheres 367.3
1877 Male, age 55, unknown 366.9
2297 Male, age 75, both hemispheres 263.1
Cervical spinal cord, ventral horn
nTPM: 370.3
2098 Female, age 72, unknown 710.7
2068 Male, age 55, unknown 318.7
2480 Male, age 75, both hemispheres 302.6
2809 Male, age 90, both hemispheres 302.2
2295 Male, age 66, both hemispheres 301.1
2820 Female, age 79, both hemispheres 286.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

556.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 556.7
Samples: 159

Max nTPM: 1251.6
Min nTPM: 193.6
Std nTPM: 218.6
Median nTPM: 541.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1251.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1245.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1182.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1145.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1083.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 981.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 963.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 962.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 947.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 947.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 939.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 923.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 916.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 911.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 899.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 851.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 848.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 841.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 827.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 819.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 806.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 792.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 788.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 771.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 735.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 725.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 725.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 718.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 714.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 712.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 707.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 706.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 703.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 701.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 696.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 690.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 687.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 687.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 680.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 680.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 673.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 672.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 669.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 668.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 666.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 656.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 649.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 643.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 642.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 641.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 641.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 637.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 636.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 631.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 620.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 619.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 611.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 606.8
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 605.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 604.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 589.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 583.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 583.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 583.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 582.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 582.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 581.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 575.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 562.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 561.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 554.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 554.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 554.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 552.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 552.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 551.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 549.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 547.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 542.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 541.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 540.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 530.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 525.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 524.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 524.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 512.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 505.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 503.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 499.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 496.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 495.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 494.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 491.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 489.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 487.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 486.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 485.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 473.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 470.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 462.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 461.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 461.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 460.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 457.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 453.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 450.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 450.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 449.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 449.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 445.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 444.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 442.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 433.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 431.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 429.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 428.3
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 426.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 420.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 397.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 393.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 391.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 391.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 390.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 385.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 375.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 371.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 370.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 367.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 352.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 342.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 339.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 332.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 329.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 321.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 321.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 320.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 319.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 318.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 314.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 313.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 305.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 292.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 286.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 286.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 275.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 270.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 258.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 257.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 257.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 252.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 243.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 241.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 240.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 234.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 228.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 220.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 216.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 196.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 193.6
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

477.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 477.1
FF:10181-103D1 60 years, female 550.5
FF:10159-103A6 76 years, female 403.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

379.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 245.0
Samples: 4

Max nTPM: 319.9
Min nTPM: 214.0
Sample A Female 214.7
Sample B Female 214.0
Sample C Male 319.9
Sample D Male 231.2
Ventral spinal cord
nTPM: 379.6
Samples: 4

Max nTPM: 501.1
Min nTPM: 296.3
Sample A Female 296.3
Sample B Female 347.1
Sample C Male 501.1
Sample D Male 373.8

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