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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:158.2 nTPM
HPA Brain:8.3 nTPM
GTEx:158.2 nTPM
FANTOM5:105.1 Scaled Tags Per Million
Pig:65.2 nTPM
Mouse:106.9 nTPM
Allen mouse:21.4 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

8.3
Sample id Sample description nTPM
Amygdala
nTPM: 0.8
2517 Female, age 94, left hemisphere 1.4
2695 Female, age 67, right hemisphere 1.3
1987 Female, age 91, left hemisphere 0.9
2514 Male, age 75, right hemisphere 0.6
2814 Male, age 76, right hemisphere 0.0
Basal amygdala
nTPM: 4.4
2243 Female, age 91, right hemisphere 19.7
2110 Male, age 80, left hemisphere 3.1
2685 Female, age 94, left hemisphere 1.8
2827 Female, age 67, right hemisphere 1.1
2609 Male, age 75, right hemisphere 0.6
1955 Male, age 76, both hemispheres 0.1
Central amygdala
nTPM: 4.7
2239 Male, age 80, left hemisphere 20.0
2826 Female, age 94, left hemisphere 2.2
2515 Male, age 75, right hemisphere 1.1
2701 Female, age 91, right hemisphere 0.4
1905 Male, age 76, both hemispheres 0.0
Corticomedial amygdala
nTPM: 8.3
2240 Male, age 76, both hemispheres 20.1
2242 Female, age 91, right hemisphere 17.6
2429 Female, age 94, left hemisphere 7.6
2428 Male, age 75, right hemisphere 2.6
2535 Female, age 67, right hemisphere 1.0
2829 Male, age 80, left hemisphere 0.7
Lateral amygdala
nTPM: 0.6
2534 Female, age 94, left hemisphere 1.6
2830 Female, age 67, right hemisphere 1.1
2255 Female, age 91, right hemisphere 0.5
2516 Male, age 75, right hemisphere 0.5
1883 Male, age 76, both hemispheres 0.1
2256 Male, age 80, left hemisphere 0.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

158.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 158.2
Samples: 152

Max nTPM: 270.1
Min nTPM: 84.5
Std nTPM: 31.8
Median nTPM: 152.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 270.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 254.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 244.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 231.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 228.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 227.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 218.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 218.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 213.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 213.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 208.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 203.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 202.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 202.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 201.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 200.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 196.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 196.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 196.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 194.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 193.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 192.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 191.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 188.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 187.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 186.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 185.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 184.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 184.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 183.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 183.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 181.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 179.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 178.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 178.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 177.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 177.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 176.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 176.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 175.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 175.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 175.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 174.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 174.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 173.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 172.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 171.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 171.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 171.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 170.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 169.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 167.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 167.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 167.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 165.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 164.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 163.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 163.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 163.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 162.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 162.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 161.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 160.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 157.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 157.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 156.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 156.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 156.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 156.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 156.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 155.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 155.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 155.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 153.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 153.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 153.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 152.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 151.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 149.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 149.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 149.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 149.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 149.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 148.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 148.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 148.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 147.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 146.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 146.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 146.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 145.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 145.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 145.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 145.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 145.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 144.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 143.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 143.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 143.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 143.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 142.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 142.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 142.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 142.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 142.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 142.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 141.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 141.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 141.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 141.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 140.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 140.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 138.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 138.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 138.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 138.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 138.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 138.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 137.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 136.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 136.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 136.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 136.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 135.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 134.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 133.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 133.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 131.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 131.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 130.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 128.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 128.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 126.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 125.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 125.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 123.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 123.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 121.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 119.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 119.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 118.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 118.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 113.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 112.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 108.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 108.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 104.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 103.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 99.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 98.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 85.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 84.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

105.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 105.1
FF:10151-102I7 76 years, female 105.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

65.2
Pig sample Sample description nTPM
Amygdala
nTPM: 65.2
Samples: 4

Max nTPM: 86.6
Min nTPM: 54.8
Sample A Female 86.6
Sample B Female 54.8
Sample C Male 58.1
Sample D Male 61.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

106.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 106.9
Samples: 4

Max nTPM: 118.3
Min nTPM: 97.4
Sample A Male 112.1
Sample B Male 118.3
Sample C Female 99.6
Sample D Female 97.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

21.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 21.4
72735 Antisense, RP_040407_01_B07, Mouse strain C57BL/6J (56 days, male) 25.3
67752111 Antisense, RP_040922_01_C04, Mouse strain C57BL/6J (56 days, male) 17.5

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