MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:40.2 nTPM
HPA Brain:40.6 nTPM
GTEx:40.2 nTPM
FANTOM5:100.6 Scaled Tags Per Million
Pig:64.5 nTPM
Mouse:54.8 nTPM
Allen mouse:0.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 40.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.1
2019 Male, age 18, unknown 36.6
2411 Female, age 72, unknown 36.3
1870 Female, age 42, unknown 36.1
1827 Male, age 72, unknown 33.6
1833 Male, age 53, unknown 33.3
2219 Male, age 76, both hemispheres 33.0
1830 Male, age 51, unknown 30.6
2586 Male, age 75, left hemisphere 27.9
2828 Female, age 72, unknown 27.9
2666 Male, age 74, left hemisphere 25.9
Dorsal raphe nucleus
nTPM: 33.7
2298 Female, age 72, unknown 38.1
1828 Male, age 53, unknown 33.5
2016 Female, age 72, unknown 32.9
2750 Male, age 76, both hemispheres 32.8
2047 Male, age 72, unknown 31.0
Inferior colliculus
nTPM: 36.8
2097 Female, age 72, unknown 40.9
1890 Male, age 53, unknown 36.9
1848 Female, age 42, unknown 35.7
2849 Male, age 72, unknown 33.8
Median raphe nucleus
nTPM: 35.6
2220 Male, age 76, midline 35.6
Periaquaductal grey, anterior
nTPM: 34.3
2502 Female, age 75, unknown 40.0
1947 Male, age 18, unknown 34.7
1795 Male, age 51, unknown 28.1
Periaquaductal grey, dorsal
nTPM: 33.8
2850 Male, age 76, both hemispheres 36.3
1840 Male, age 53, unknown 35.4
1831 Male, age 72, unknown 32.2
2464 Female, age 72, unknown 31.4
Periaquaductal grey, lateral
nTPM: 33.4
2053 Male, age 18, unknown 35.4
2272 Male, age 74, both hemispheres 33.4
2140 Male, age 76, both hemispheres 31.3
Pretectal area
nTPM: 37.6
1944 Female, age 72, unknown 42.6
1817 Female, age 42, unknown 40.5
1816 Male, age 51, unknown 40.1
2007 Male, age 72, unknown 39.7
2273 Male, age 74, both hemispheres 39.4
1815 Male, age 53, unknown 38.8
2667 Female, age 75, unknown 38.6
2224 Female, age 72, unknown 38.3
2316 Male, age 76, right hemisphere 32.6
2825 Male, age 18, unknown 31.8
2407 Male, age 75, both hemispheres 31.5
Red nucleus
nTPM: 33.9
1821 Female, age 72, unknown 46.2
1865 Male, age 51, unknown 36.5
2725 Female, age 75, unknown 35.7
1904 Male, age 53, unknown 35.5
1954 Female, age 42, unknown 35.1
2785 Male, age 18, unknown 34.8
2823 Male, age 76, right hemisphere 33.5
2503 Female, age 72, unknown 31.9
2769 Male, age 72, unknown 31.2
2227 Male, age 72, unknown 31.0
2584 Male, age 75, left hemisphere 29.7
2588 Male, age 74, left hemisphere 25.5
Substantia nigra
nTPM: 40.6
2241 Male, age 72, unknown 53.9
1916 Female, age 42, unknown 48.2
2409 Female, age 72, unknown 44.6
1851 Male, age 51, unknown 44.2
1889 Female, age 72, unknown 42.6
1941 Male, age 53, unknown 40.1
2699 Male, age 18, unknown 37.6
2590 Female, age 75, unknown 32.3
2583 Male, age 75, right hemisphere 31.8
2665 Male, age 74, both hemispheres 30.9
Superior colliculus
nTPM: 33.6
2587 Male, age 74, left hemisphere 38.4
2087 Female, age 72, unknown 35.9
1913 Female, age 42, unknown 35.4
1895 Male, age 76, right hemisphere 35.3
1839 Male, age 51, unknown 32.7
1796 Male, age 53, unknown 32.5
2261 Male, age 18, unknown 32.5
2668 Female, age 75, unknown 32.1
1995 Male, age 72, unknown 32.0
2664 Male, age 75, both hemispheres 29.3
Ventral tegmental area
nTPM: 37.9
2410 Female, age 72, unknown 41.1
2218 Male, age 76, both hemispheres 40.9
1915 Female, age 42, unknown 40.8
1942 Male, age 51, unknown 37.9
2223 Female, age 72, unknown 34.7
2021 Male, age 53, unknown 32.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 40.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 40.2
Samples: 139

Max nTPM: 65.5
Min nTPM: 26.4
Std nTPM: 7.7
Median nTPM: 39.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 65.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 62.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 62.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 60.7
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 59.3
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 58.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 57.3
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 55.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 55.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 54.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 53.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 100.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 100.6
FF:10158-103A5 76 years, female 100.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 64.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 54.6
Samples: 4

Max nTPM: 73.1
Min nTPM: 37.1
Sample A Female 73.1
Sample B Female 49.1
Sample C Male 59.1
Sample D Male 37.1
Midbrain
nTPM: 64.5
Samples: 4

Max nTPM: 79.6
Min nTPM: 54.7
Sample A Female 56.6
Sample B Female 54.7
Sample C Male 79.6
Sample D Male 66.9
Periaqueductal gray
nTPM: 48.7
Samples: 3

Max nTPM: 52.2
Min nTPM: 45.5
Sample B Female 45.5
Sample C Male 52.2
Sample D Male 48.5
Superior colliculi
nTPM: 64.1
Samples: 4

Max nTPM: 76.8
Min nTPM: 49.6
Sample A Female 67.8
Sample B Female 49.6
Sample C Male 76.8
Sample D Male 62.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 54.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 54.9
Samples: 4

Max nTPM: 56.7
Min nTPM: 52.1
Sample A Male 52.1
Sample B Male 54.1
Sample C Female 56.5
Sample D Female 56.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
69134583 Antisense, RP_050321_03_B06, Mouse strain C57BL/6J (56 days, male) 0.8

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