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IFT172
HPA
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  • IFT172
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

IFT172
Synonyms BBS20, NPHP17, osm-1, SLB, wim
Gene descriptioni

Full gene name according to HGNC.

Intraflagellar transport 172
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Disease related genes
Human disease related genes
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 2
Cytoband p23.3
Chromosome location (bp) 27444377 - 27489805
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

6
Ensembl ENSG00000138002 (version 109)
Entrez gene 26160
HGNC HGNC:30391
UniProt Q9UG01 (UniProt - Evidence at protein level)
neXtProt NX_Q9UG01
GeneCards IFT172
Antibodypedia IFT172 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Required for the maintenance and formation of cilia. Plays an indirect role in hedgehog (Hh) signaling, cilia being required for all activity of the hedgehog pathway (By similarity).... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Developmental protein
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a subunit of the intraflagellar transport subcomplex IFT-B. Subcomplexes IFT-A and IFT-B are necessary for ciliary assembly and maintenance. Mutations in this gene have been associated with skeletal ciliopathies, with or without polydactyly, such as such short-rib thoracic dysplasias 1, 9 or 10. [provided by RefSeq, Mar 2014]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
IFT172-201
ENSP00000260570
ENST00000260570
Q9UG01
[Direct mapping] Intraflagellar transport protein 172 homolog
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
Human disease related genes
   Congenital disorders of metabolism
   Other congenital disorders of metabolism
   Congenital malformations
   Congenital malformations of the musculoskeletal system
   Nervous system diseases
   Eye disease
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0001841 [neural tube formation]
GO:0001843 [neural tube closure]
GO:0001947 [heart looping]
GO:0005515 [protein binding]
GO:0005929 [cilium]
GO:0005930 [axoneme]
GO:0007219 [Notch signaling pathway]
GO:0007224 [smoothened signaling pathway]
GO:0007368 [determination of left/right symmetry]
GO:0007420 [brain development]
GO:0007507 [heart development]
GO:0008544 [epidermis development]
GO:0008589 [regulation of smoothened signaling pathway]
GO:0009953 [dorsal/ventral pattern formation]
GO:0010839 [negative regulation of keratinocyte proliferation]
GO:0016485 [protein processing]
GO:0021522 [spinal cord motor neuron differentiation]
GO:0021915 [neural tube development]
GO:0030992 [intraciliary transport particle B]
GO:0031122 [cytoplasmic microtubule organization]
GO:0035720 [intraciliary anterograde transport]
GO:0036064 [ciliary basal body]
GO:0042073 [intraciliary transport]
GO:0042995 [cell projection]
GO:0043616 [keratinocyte proliferation]
GO:0045879 [negative regulation of smoothened signaling pathway]
GO:0045880 [positive regulation of smoothened signaling pathway]
GO:0048596 [embryonic camera-type eye morphogenesis]
GO:0050680 [negative regulation of epithelial cell proliferation]
GO:0060021 [roof of mouth development]
GO:0060173 [limb development]
GO:0060271 [cilium assembly]
GO:0060348 [bone development]
GO:0061525 [hindgut development]
GO:0070986 [left/right axis specification]
GO:0097225 [sperm midpiece]
GO:0097228 [sperm principal piece]
GO:0097542 [ciliary tip]
GO:0097598 [sperm cytoplasmic droplet]
GO:1903561 [extracellular vesicle]
GO:1905515 [non-motile cilium assembly]
Show all
1749 aa
197.6 kDa
No 0
IFT172-202
ENSP00000352443
ENST00000359466
Q9UG01
[Direct mapping] Intraflagellar transport protein 172 homolog
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
Human disease related genes
   Congenital disorders of metabolism
   Other congenital disorders of metabolism
   Congenital malformations
   Congenital malformations of the musculoskeletal system
   Nervous system diseases
   Eye disease
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005929 [cilium]
GO:0005930 [axoneme]
GO:0030992 [intraciliary transport particle B]
GO:0035720 [intraciliary anterograde transport]
GO:0036064 [ciliary basal body]
GO:0042073 [intraciliary transport]
GO:0042995 [cell projection]
GO:0060271 [cilium assembly]
GO:0097542 [ciliary tip]
GO:1903561 [extracellular vesicle]
Show all
532 aa
59.7 kDa
No 0
IFT172-203
ENSP00000407408
ENST00000416524
F5GZ56
[Direct mapping] Intraflagellar transport protein 172 homolog
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital disorders of metabolism
   Other congenital disorders of metabolism
   Congenital malformations
   Congenital malformations of the musculoskeletal system
   Nervous system diseases
   Eye disease
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
Show all
511 aa
57.4 kDa
No 0
IFT172-205
ENSP00000404082
ENST00000443889
H7C252
[Direct mapping] Intraflagellar transport protein 172 homolog
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital disorders of metabolism
   Other congenital disorders of metabolism
   Congenital malformations
   Congenital malformations of the musculoskeletal system
   Nervous system diseases
   Eye disease
Protein evidence (Ezkurdia et al 2014)
Show all
196 aa
21.9 kDa
No 0
IFT172-225
ENSP00000502283
ENST00000675690
A0A6Q8PGJ2
[Direct mapping] Intraflagellar transport protein 172 homolog
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital disorders of metabolism
   Other congenital disorders of metabolism
   Congenital malformations
   Congenital malformations of the musculoskeletal system
   Nervous system diseases
   Eye disease
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
Show all
1727 aa
195 kDa
No 0
IFT172-226
ENSP00000501700
ENST00000675728
F5GZ56
[Direct mapping] Intraflagellar transport protein 172 homolog
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital disorders of metabolism
   Other congenital disorders of metabolism
   Congenital malformations
   Congenital malformations of the musculoskeletal system
   Nervous system diseases
   Eye disease
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
Show all
511 aa
57.4 kDa
No 0

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