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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:67.9 nTPM
GTEx:67.9 nTPM
FANTOM5:200.2 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA002822
Squamous epithelial cells Not detected


VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

67.9
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 67.9
Samples: 156

Max nTPM: 214.3
Min nTPM: 5.0
Std nTPM: 44.5
Median nTPM: 63.3
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 214.3
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 204.0
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 200.0
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 190.4
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 173.4
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 172.3
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 160.1
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 156.7
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 153.5
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 141.5
GTEX-QCQG-1226-SM-48U23 50-59 years, female 139.6
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 138.0
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 133.8
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 129.9
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 125.1
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 125.1
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 123.7
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 122.5
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 120.5
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 119.9
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 119.4
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 114.6
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 114.1
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 113.9
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 112.3
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 109.1
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 106.7
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 105.6
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 104.3
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 103.1
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 102.6
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 101.9
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 101.5
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 101.3
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 100.0
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 98.8
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 96.1
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 93.8
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 93.1
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 91.9
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 91.5
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 89.1
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 88.9
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 88.4
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 87.4
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 86.5
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 86.4
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 84.6
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 84.2
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 84.0
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 83.4
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 83.1
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 82.6
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 81.7
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 80.8
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 79.7
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 78.8
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 77.5
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 76.2
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 76.1
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 75.2
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 73.6
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 72.5
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 71.7
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 71.1
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 70.9
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 70.2
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 69.8
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 69.6
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 69.2
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 69.0
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 66.7
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 66.5
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 66.4
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 66.2
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 64.7
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 64.1
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 63.9
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 62.6
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 61.7
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 59.7
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 59.2
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 58.8
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 56.9
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 56.4
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 55.9
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 55.4
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 54.5
GTEX-16NPV-2526-SM-6M483 50-59 years, female 54.0
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 53.4
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 53.0
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 52.5
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 51.0
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 50.7
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 50.3
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 47.6
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 47.0
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 46.8
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 45.8
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 45.0
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 42.4
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 41.2
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 41.0
GTEX-1C475-0526-SM-793AC 40-49 years, female 40.8
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 40.6
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 40.2
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 38.4
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 38.1
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 37.1
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 36.6
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 35.6
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 35.3
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 34.0
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 33.8
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 32.8
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 31.5
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 30.7
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 30.6
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 30.2
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 29.7
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 29.1
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 28.1
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 28.1
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 27.9
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 27.1
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 27.0
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 26.2
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 25.0
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 24.3
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 23.9
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 23.2
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 23.1
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 22.7
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 22.2
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 22.0
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 20.1
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 19.2
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 18.3
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 17.5
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 17.5
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 16.8
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 16.7
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 15.6
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 15.2
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 14.6
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 13.6
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 12.7
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 12.6
GTEX-14PKU-1326-SM-6871B 40-49 years, female 12.3
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 10.5
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 9.7
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 7.7
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 7.3
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 7.2
GTEX-11I78-2026-SM-5987C 50-59 years, female 6.8
GTEX-S341-1226-SM-4AD5S 40-49 years, female 5.0
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

200.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 200.2
FF:10204-103F6 68 years, female 200.2

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