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CYP2C9
HPA
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  • CYP2C9
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

CYP2C9
Synonyms CYP2C10, P450IIC9
Gene descriptioni

Full gene name according to HGNC.

Cytochrome P450 family 2 subfamily C member 9
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Enzymes
Human disease related genes
Metabolic proteins
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 10
Cytoband q23.33
Chromosome location (bp) 94938658 - 94990091
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

2
Ensembl ENSG00000138109 (version 109)
Entrez gene 1559
HGNC HGNC:2623
UniProt P11712 (UniProt - Evidence at protein level)
neXtProt NX_P11712
GeneCards CYP2C9
Antibodypedia CYP2C9 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

A cytochrome P450 monooxygenase involved in the metabolism of various endogenous substrates, including fatty acids and steroids 1, 2, 3, 4, 5, 6, 7. Mechanistically, uses molecular oxygen inserting one oxygen atom into a substrate, and reducing the second into a water molecule, with two electrons provided by NADPH via cytochrome P450 reductase (NADPH--hemoprotein reductase) 8, 9, 10, 11, 12, 13, 14. Catalyzes the epoxidation of double bonds of polyunsaturated fatty acids (PUFA) 15, 16, 17, 18. Catalyzes the hydroxylation of carbon-hydrogen bonds. Metabolizes cholesterol toward 25-hydroxycholesterol, a physiological regulator of cellular cholesterol homeostasis 19. Exhibits low catalytic activity for the formation of catechol estrogens from 17beta-estradiol (E2) and estrone (E1), namely 2-hydroxy E1 and E2 20. Catalyzes bisallylic hydroxylation and hydroxylation with double-bond migration of polyunsaturated fatty acids (PUFA) 21, 22. Also metabolizes plant monoterpenes such as limonene. Oxygenates (R)- and (S)-limonene to produce carveol and perillyl alcohol 23. Contributes to the wide pharmacokinetics variability of the metabolism of drugs such as S-warfarin, diclofenac, phenytoin, tolbutamide and losartan 24.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Monooxygenase, Oxidoreductase
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Lipid metabolism, Steroid metabolism, Sterol metabolism
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

Heme, Iron, Metal-binding
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a member of the cytochrome P450 superfamily of enzymes. The cytochrome P450 proteins are monooxygenases which catalyze many reactions involved in drug metabolism and synthesis of cholesterol, steroids and other lipids. This protein localizes to the endoplasmic reticulum and its expression is induced by rifampin. The enzyme is known to metabolize many xenobiotics, including phenytoin, tolbutamide, ibuprofen and S-warfarin. Studies identifying individuals who are poor metabolizers of phenytoin and tolbutamide suggest that this gene is polymorphic. The gene is located within a cluster of cytochrome P450 genes on chromosome 10q24. [provided by RefSeq, Jul 2008]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
CYP2C9-201
ENSP00000260682
ENST00000260682
P11712
[Direct mapping] Cytochrome P450 2C9
Show all
S5RV20
[Target identity:100%; Query identity:100%] Cytochrome P450 family 2 subfamily C polypeptide 9
Show all
Enzymes
   ENZYME proteins
   Oxidoreductases
Metabolic proteins
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   Secreted proteins predicted by MDSEC
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
   DeepSig predicted secreted proteins
Predicted intracellular proteins
Human disease related genes
   Congenital disorders of metabolism
   Other congenital disorders of metabolism
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0004497 [monooxygenase activity]
GO:0005506 [iron ion binding]
GO:0005737 [cytoplasm]
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005886 [plasma membrane]
GO:0006082 [organic acid metabolic process]
GO:0006629 [lipid metabolic process]
GO:0006805 [xenobiotic metabolic process]
GO:0008202 [steroid metabolic process]
GO:0008203 [cholesterol metabolic process]
GO:0008210 [estrogen metabolic process]
GO:0008392 [arachidonic acid epoxygenase activity]
GO:0008395 [steroid hydroxylase activity]
GO:0008404 [arachidonic acid 14,15-epoxygenase activity]
GO:0008405 [arachidonic acid 11,12-epoxygenase activity]
GO:0016020 [membrane]
GO:0016098 [monoterpenoid metabolic process]
GO:0016491 [oxidoreductase activity]
GO:0016705 [oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen]
GO:0016712 [oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen]
GO:0018675 [(S)-limonene 6-monooxygenase activity]
GO:0018676 [(S)-limonene 7-monooxygenase activity]
GO:0019369 [arachidonic acid metabolic process]
GO:0019373 [epoxygenase P450 pathway]
GO:0019627 [urea metabolic process]
GO:0020037 [heme binding]
GO:0032787 [monocarboxylic acid metabolic process]
GO:0034875 [caffeine oxidase activity]
GO:0042178 [xenobiotic catabolic process]
GO:0042759 [long-chain fatty acid biosynthetic process]
GO:0043231 [intracellular membrane-bounded organelle]
GO:0043603 [cellular amide metabolic process]
GO:0046456 [icosanoid biosynthetic process]
GO:0046872 [metal ion binding]
GO:0052741 [(R)-limonene 6-monooxygenase activity]
GO:0070330 [aromatase activity]
GO:0070989 [oxidative demethylation]
GO:0097267 [omega-hydroxylase P450 pathway]
Show all
490 aa
55.6 kDa
Yes 0
CYP2C9-202
ENSP00000495649
ENST00000461906
P11712
[Direct mapping] Cytochrome P450 2C9
Show all
Enzymes
   ENZYME proteins
   Oxidoreductases
Metabolic proteins
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Secreted proteins predicted by MDSEC
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
   DeepTMHMM predicted secreted proteins
   DeepSig predicted secreted proteins
Predicted intracellular proteins
Human disease related genes
   Congenital disorders of metabolism
   Other congenital disorders of metabolism
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0004497 [monooxygenase activity]
GO:0005506 [iron ion binding]
GO:0005737 [cytoplasm]
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005886 [plasma membrane]
GO:0006082 [organic acid metabolic process]
GO:0006629 [lipid metabolic process]
GO:0006805 [xenobiotic metabolic process]
GO:0008202 [steroid metabolic process]
GO:0008203 [cholesterol metabolic process]
GO:0008210 [estrogen metabolic process]
GO:0008392 [arachidonic acid epoxygenase activity]
GO:0008395 [steroid hydroxylase activity]
GO:0008404 [arachidonic acid 14,15-epoxygenase activity]
GO:0008405 [arachidonic acid 11,12-epoxygenase activity]
GO:0016020 [membrane]
GO:0016098 [monoterpenoid metabolic process]
GO:0016491 [oxidoreductase activity]
GO:0016705 [oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen]
GO:0016712 [oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen]
GO:0018675 [(S)-limonene 6-monooxygenase activity]
GO:0018676 [(S)-limonene 7-monooxygenase activity]
GO:0019369 [arachidonic acid metabolic process]
GO:0019373 [epoxygenase P450 pathway]
GO:0019627 [urea metabolic process]
GO:0020037 [heme binding]
GO:0032787 [monocarboxylic acid metabolic process]
GO:0034875 [caffeine oxidase activity]
GO:0042178 [xenobiotic catabolic process]
GO:0042759 [long-chain fatty acid biosynthetic process]
GO:0043231 [intracellular membrane-bounded organelle]
GO:0043603 [cellular amide metabolic process]
GO:0046456 [icosanoid biosynthetic process]
GO:0046872 [metal ion binding]
GO:0052741 [(R)-limonene 6-monooxygenase activity]
GO:0070330 [aromatase activity]
GO:0070989 [oxidative demethylation]
GO:0097267 [omega-hydroxylase P450 pathway]
Show all
162 aa
18 kDa
Yes 0

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