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DNA2
HPA
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  • DNA2
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

DNA2
Synonyms DNA2L, KIAA0083
Gene descriptioni

Full gene name according to HGNC.

DNA replication helicase/nuclease 2
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Disease related genes
Enzymes
Human disease related genes
Plasma proteins
Potential drug targets
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 10
Cytoband q21.3
Chromosome location (bp) 68414064 - 68472121
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

4
Ensembl ENSG00000138346 (version 109)
Entrez gene 1763
HGNC HGNC:2939
UniProt P51530 (UniProt - Evidence at protein level)
neXtProt NX_P51530
GeneCards DNA2
Antibodypedia DNA2 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Key enzyme involved in DNA replication and DNA repair in nucleus and mitochondrion. Involved in Okazaki fragments processing by cleaving long flaps that escape FEN1: flaps that are longer than 27 nucleotides are coated by replication protein A complex (RPA), leading to recruit DNA2 which cleaves the flap until it is too short to bind RPA and becomes a substrate for FEN1. Also involved in 5'-end resection of DNA during double-strand break (DSB) repair: recruited by BLM and mediates the cleavage of 5'-ssDNA, while the 3'-ssDNA cleavage is prevented by the presence of RPA. Also involved in DNA replication checkpoint independently of Okazaki fragments processing. Possesses different enzymatic activities, such as single-stranded DNA (ssDNA)- dependent ATPase, 5'-3' helicase and endonuclease activities. While the ATPase and endonuclease activities are well-defined and play a key role in Okazaki fragments processing and DSB repair, the 5'-3' DNA helicase activity is subject to debate. According to various reports, the helicase activity is weak and its function remains largely unclear. Helicase activity may promote the motion of DNA2 on the flap, helping the nuclease function.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

DNA-binding, Endonuclease, Helicase, Hydrolase, Multifunctional enzyme, Nuclease
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

DNA damage, DNA repair, DNA replication
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

4Fe-4S, ATP-binding, Iron, Iron-sulfur, Metal-binding, Nucleotide-binding
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a member of the DNA2/NAM7 helicase family. The encoded protein is a conserved helicase/nuclease involved in the maintenance of mitochondrial and nuclear DNA stability. Mutations in this gene are associated with autosomal dominant progressive external ophthalmoplegia-6 (PEOA6) and Seckel syndrome 8. Alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Sep 2014]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
DNA2-201
ENSP00000351185
ENST00000358410
P51530
[Direct mapping] DNA replication ATP-dependent helicase/nuclease DNA2 DNA replication nuclease DNA2 DNA replication ATP-dependent helicase DNA2
Show all
Enzymes
   ENZYME proteins
   Hydrolases
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Disease related genes
Potential drug targets
Human disease related genes
   Congenital disorders of metabolism
   Mitochondrial diseases
   Congenital malformations
   Other congenital malformations
   Nervous system diseases
   Eye disease
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000076 [DNA replication checkpoint signaling]
GO:0000166 [nucleotide binding]
GO:0000723 [telomere maintenance]
GO:0000729 [DNA double-strand break processing]
GO:0000781 [chromosome, telomeric region]
GO:0003677 [DNA binding]
GO:0003678 [DNA helicase activity]
GO:0003723 [RNA binding]
GO:0003824 [catalytic activity]
GO:0004386 [helicase activity]
GO:0004518 [nuclease activity]
GO:0004519 [endonuclease activity]
GO:0005515 [protein binding]
GO:0005524 [ATP binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0005739 [mitochondrion]
GO:0005760 [gamma DNA polymerase complex]
GO:0006259 [DNA metabolic process]
GO:0006260 [DNA replication]
GO:0006264 [mitochondrial DNA replication]
GO:0006281 [DNA repair]
GO:0006284 [base-excision repair]
GO:0006974 [cellular response to DNA damage stimulus]
GO:0008152 [metabolic process]
GO:0016787 [hydrolase activity]
GO:0016887 [ATP hydrolysis activity]
GO:0016890 [site-specific endodeoxyribonuclease activity, specific for altered base]
GO:0017108 [5'-flap endonuclease activity]
GO:0017116 [single-stranded DNA helicase activity]
GO:0032201 [telomere maintenance via semi-conservative replication]
GO:0032508 [DNA duplex unwinding]
GO:0033567 [DNA replication, Okazaki fragment processing]
GO:0042645 [mitochondrial nucleoid]
GO:0043137 [DNA replication, removal of RNA primer]
GO:0043139 [5'-3' DNA helicase activity]
GO:0043504 [mitochondrial DNA repair]
GO:0044806 [G-quadruplex DNA unwinding]
GO:0045740 [positive regulation of DNA replication]
GO:0046872 [metal ion binding]
GO:0051536 [iron-sulfur cluster binding]
GO:0051539 [4 iron, 4 sulfur cluster binding]
GO:0071932 [replication fork reversal]
GO:0090305 [nucleic acid phosphodiester bond hydrolysis]
GO:0090656 [t-circle formation]
GO:1902990 [mitotic telomere maintenance via semi-conservative replication]
Show all
1060 aa
120.4 kDa
No 0
DNA2-203
ENSP00000382133
ENST00000399180
P51530
[Direct mapping] DNA replication ATP-dependent helicase/nuclease DNA2 DNA replication nuclease DNA2 DNA replication ATP-dependent helicase DNA2
Show all
Enzymes
   ENZYME proteins
   Hydrolases
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Disease related genes
Potential drug targets
Human disease related genes
   Congenital disorders of metabolism
   Mitochondrial diseases
   Congenital malformations
   Other congenital malformations
   Nervous system diseases
   Eye disease
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000076 [DNA replication checkpoint signaling]
GO:0000166 [nucleotide binding]
GO:0000723 [telomere maintenance]
GO:0000729 [DNA double-strand break processing]
GO:0000781 [chromosome, telomeric region]
GO:0003677 [DNA binding]
GO:0003678 [DNA helicase activity]
GO:0003723 [RNA binding]
GO:0003824 [catalytic activity]
GO:0004386 [helicase activity]
GO:0004518 [nuclease activity]
GO:0004519 [endonuclease activity]
GO:0005515 [protein binding]
GO:0005524 [ATP binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0005739 [mitochondrion]
GO:0005760 [gamma DNA polymerase complex]
GO:0006259 [DNA metabolic process]
GO:0006260 [DNA replication]
GO:0006264 [mitochondrial DNA replication]
GO:0006281 [DNA repair]
GO:0006284 [base-excision repair]
GO:0006974 [cellular response to DNA damage stimulus]
GO:0008152 [metabolic process]
GO:0016787 [hydrolase activity]
GO:0016887 [ATP hydrolysis activity]
GO:0016890 [site-specific endodeoxyribonuclease activity, specific for altered base]
GO:0017108 [5'-flap endonuclease activity]
GO:0017116 [single-stranded DNA helicase activity]
GO:0032201 [telomere maintenance via semi-conservative replication]
GO:0032508 [DNA duplex unwinding]
GO:0033567 [DNA replication, Okazaki fragment processing]
GO:0042645 [mitochondrial nucleoid]
GO:0043137 [DNA replication, removal of RNA primer]
GO:0043139 [5'-3' DNA helicase activity]
GO:0043504 [mitochondrial DNA repair]
GO:0044806 [G-quadruplex DNA unwinding]
GO:0045740 [positive regulation of DNA replication]
GO:0046872 [metal ion binding]
GO:0051536 [iron-sulfur cluster binding]
GO:0051539 [4 iron, 4 sulfur cluster binding]
GO:0071932 [replication fork reversal]
GO:0090305 [nucleic acid phosphodiester bond hydrolysis]
GO:0090656 [t-circle formation]
GO:1902990 [mitotic telomere maintenance via semi-conservative replication]
Show all
687 aa
78.5 kDa
No 0
DNA2-204
ENSP00000389713
ENST00000440722
H0Y455
[Direct mapping] DNA replication ATP-dependent helicase/nuclease
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital disorders of metabolism
   Mitochondrial diseases
   Congenital malformations
   Other congenital malformations
   Nervous system diseases
   Eye disease
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000166 [nucleotide binding]
GO:0003677 [DNA binding]
GO:0003824 [catalytic activity]
GO:0004386 [helicase activity]
GO:0004518 [nuclease activity]
GO:0005524 [ATP binding]
GO:0005634 [nucleus]
GO:0005739 [mitochondrion]
GO:0006260 [DNA replication]
GO:0006281 [DNA repair]
GO:0006974 [cellular response to DNA damage stimulus]
GO:0008152 [metabolic process]
GO:0016787 [hydrolase activity]
GO:0016887 [ATP hydrolysis activity]
GO:0017108 [5'-flap endonuclease activity]
GO:0017116 [single-stranded DNA helicase activity]
GO:0032508 [DNA duplex unwinding]
GO:0033567 [DNA replication, Okazaki fragment processing]
GO:0046872 [metal ion binding]
GO:0051536 [iron-sulfur cluster binding]
GO:0051539 [4 iron, 4 sulfur cluster binding]
GO:0090305 [nucleic acid phosphodiester bond hydrolysis]
Show all
375 aa
42.2 kDa
No 0
DNA2-208
ENSP00000450393
ENST00000551118
F8VR31
[Direct mapping] DNA replication ATP-dependent helicase/nuclease
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital disorders of metabolism
   Mitochondrial diseases
   Congenital malformations
   Other congenital malformations
   Nervous system diseases
   Eye disease
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000166 [nucleotide binding]
GO:0003677 [DNA binding]
GO:0003824 [catalytic activity]
GO:0004386 [helicase activity]
GO:0004518 [nuclease activity]
GO:0005524 [ATP binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005739 [mitochondrion]
GO:0006259 [DNA metabolic process]
GO:0006260 [DNA replication]
GO:0006281 [DNA repair]
GO:0006974 [cellular response to DNA damage stimulus]
GO:0008152 [metabolic process]
GO:0016787 [hydrolase activity]
GO:0016887 [ATP hydrolysis activity]
GO:0017108 [5'-flap endonuclease activity]
GO:0017116 [single-stranded DNA helicase activity]
GO:0032508 [DNA duplex unwinding]
GO:0033567 [DNA replication, Okazaki fragment processing]
GO:0046872 [metal ion binding]
GO:0051536 [iron-sulfur cluster binding]
GO:0051539 [4 iron, 4 sulfur cluster binding]
GO:0090305 [nucleic acid phosphodiester bond hydrolysis]
Show all
867 aa
98.6 kDa
No 0

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