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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
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Dictionary
Tissue proteome
Eye
Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:287.6 nTPM
GTEx:287.6 nTPM
FANTOM5:14.1 Scaled Tags Per Million

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

287.6
GTEx sample id Sample description nTPM
Retina
Average nTPM: 287.6
Samples: 105

Max nTPM: 514.6
Min nTPM: 133.0
Std nTPM: 82.8
Median nTPM:
414_1 84 years, female 514.6
490_1 67 years, female 502.8
413_1 59 years, female 489.2
162_1 79 years, female 476.6
89_1 63 years, male 442.1
153_1 70 years, female 432.6
246_1 77 years, male 431.6
491_1 89 years, female 428.6
237_1 82 years, male 422.5
4_1 88 years, female 420.7
396_1 62 years, male 409.2
319_1 81 years, male 408.4
139_1 64 years, female 405.8
447_1 81 years, male 392.9
375_1 74 years, female 392.1
18_1 88 years, male 387.0
149_1 88 years, male 386.2
43_1 64 years, female 366.4
501_1 88 years, male 364.1
311_1 78 years, male 363.1
217_1 76 years, male 362.3
35_1 74 years, female 353.6
379_1 60 years, male 344.0
350_1 84 years, female 339.9
406_1 79 years, male 339.2
6_1 73 years, female 338.4
466_1 57 years, female 337.6
145_1 84 years, male 333.3
119_1 70 years, female 332.2
109_1 81 years, female 327.4
324_1 76 years, male 325.7
315_1 62 years, female 324.0
386_1 76 years, male 323.3
142_1 61 years, female 321.3
229_1 69 years, female 319.2
17_1 71 years, male 318.4
265_1 87 years, male 312.7
415_1 77 years, female 311.5
81_1 67 years, male 302.4
322_1 76 years, male 300.7
173_1 67 years, male 297.9
120_1 70 years, female 295.9
318_1 68 years, male 295.0
377_1 82 years, female 294.3
266_1 85 years, male 289.4
243_1 75 years, male 288.9
347_1 72 years, male 287.2
126_1 63 years, male 286.7
468_1 89 years, male 285.5
316_1 62 years, male 284.6
254_1 77 years, female 284.4
389_1 86 years, female 283.3
9_1 66 years, female 273.5
117_1 61 years, male 264.7
384_1 83 years, male 262.5
348_1 84 years, male 259.6
518_1 75 years, female 259.6
32_1 67 years, male 259.1
99_1 64 years, male 258.9
137_1 83 years, male 258.9
355_1 70 years, female 258.3
2_1 77 years, female 254.2
313_1 79 years, female 251.4
356_1 87 years, female 250.7
351_1 91 years, male 249.5
352_1 62 years, male 248.2
42_1 85 years, male 246.3
335_1 73 years, female 241.9
405_1 91 years, male 241.6
177_1 74 years, male 240.9
293_1 68 years, female 238.9
115_1 83 years, male 236.2
499_1 55 years, female 235.1
404_1 82 years, female 234.5
218_1 71 years, female 226.4
480_1 63 years, male 225.6
517_1 88 years, male 224.2
425_1 59 years, female 222.5
317_1 60 years, male 221.7
354_1 81 years, female 221.0
292_1 71 years, male 216.4
503_1 68 years, male 215.7
321_1 62 years, female 214.5
349_1 83 years, male 213.1
526_1 61 years, male 212.2
251_1 78 years, male 210.0
320_1 89 years, female 209.3
264_1 73 years, female 206.9
295_1 61 years, female 202.3
394_1 75 years, female 201.6
41_1 94 years, female 201.0
286_1 68 years, female 200.8
189_1 76 years, male 199.9
376_1 75 years, female 198.8
163_1 78 years, male 197.0
314_1 67 years, male 194.6
172_1 72 years, female 189.5
495_1 57 years, female 187.2
291_1 76 years, male 184.3
353_1 82 years, female 178.2
452_1 88 years, female 176.6
288_1 66 years, female 174.6
307_1 66 years, female 169.1
506_1 65 years, male 167.4
308_1 70 years, female 133.0
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

14.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 14.1
FF:10030-101E3 24-65 years, mixed 14.1

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