MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:44.5 nTPM
HPA Brain:164.2 nTPM
GTEx:44.5 nTPM
FANTOM5:363.9 Scaled Tags Per Million
Pig:165.5 nTPM
Mouse:47.1 nTPM
Allen mouse:2.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 164.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 135.1
2411 Female, age 72, unknown 166.8
1830 Male, age 51, unknown 165.5
1870 Female, age 42, unknown 161.2
1833 Male, age 53, unknown 156.5
2019 Male, age 18, unknown 153.1
2828 Female, age 72, unknown 120.0
2586 Male, age 75, left hemisphere 117.8
1827 Male, age 72, unknown 111.3
2219 Male, age 76, both hemispheres 102.0
2666 Male, age 74, left hemisphere 96.9
Dorsal raphe nucleus
nTPM: 106.0
2750 Male, age 76, both hemispheres 152.7
2016 Female, age 72, unknown 108.4
1828 Male, age 53, unknown 105.5
2298 Female, age 72, unknown 82.0
2047 Male, age 72, unknown 81.4
Inferior colliculus
nTPM: 104.2
1890 Male, age 53, unknown 108.7
1848 Female, age 42, unknown 106.9
2097 Female, age 72, unknown 101.3
2849 Male, age 72, unknown 100.0
Median raphe nucleus
nTPM: 94.8
2220 Male, age 76, midline 94.8
Periaquaductal grey, anterior
nTPM: 93.3
2502 Female, age 75, unknown 108.1
1947 Male, age 18, unknown 95.4
1795 Male, age 51, unknown 76.3
Periaquaductal grey, dorsal
nTPM: 87.6
2464 Female, age 72, unknown 110.0
1831 Male, age 72, unknown 93.3
2850 Male, age 76, both hemispheres 82.8
1840 Male, age 53, unknown 64.2
Periaquaductal grey, lateral
nTPM: 90.5
2053 Male, age 18, unknown 100.6
2272 Male, age 74, both hemispheres 90.5
2140 Male, age 76, both hemispheres 80.3
Pretectal area
nTPM: 102.4
1815 Male, age 53, unknown 130.7
2316 Male, age 76, right hemisphere 118.8
1817 Female, age 42, unknown 113.7
2007 Male, age 72, unknown 110.5
2407 Male, age 75, both hemispheres 108.3
2825 Male, age 18, unknown 100.0
2273 Male, age 74, both hemispheres 97.7
2667 Female, age 75, unknown 92.5
2224 Female, age 72, unknown 89.7
1944 Female, age 72, unknown 83.2
1816 Male, age 51, unknown 81.2
Red nucleus
nTPM: 164.2
1865 Male, age 51, unknown 197.3
1821 Female, age 72, unknown 192.3
1904 Male, age 53, unknown 185.1
2503 Female, age 72, unknown 176.0
2769 Male, age 72, unknown 171.0
2227 Male, age 72, unknown 170.0
2785 Male, age 18, unknown 163.1
1954 Female, age 42, unknown 161.0
2823 Male, age 76, right hemisphere 160.5
2588 Male, age 74, left hemisphere 145.3
2725 Female, age 75, unknown 129.2
2584 Male, age 75, left hemisphere 119.0
Substantia nigra
nTPM: 105.2
2583 Male, age 75, right hemisphere 124.8
2409 Female, age 72, unknown 119.5
1851 Male, age 51, unknown 116.7
1889 Female, age 72, unknown 115.4
2590 Female, age 75, unknown 113.6
1941 Male, age 53, unknown 98.7
2699 Male, age 18, unknown 98.1
2241 Male, age 72, unknown 91.9
2665 Male, age 74, both hemispheres 89.3
1916 Female, age 42, unknown 84.0
Superior colliculus
nTPM: 121.1
1913 Female, age 42, unknown 172.0
1995 Male, age 72, unknown 161.6
2587 Male, age 74, left hemisphere 129.4
2668 Female, age 75, unknown 127.8
1895 Male, age 76, right hemisphere 122.7
1839 Male, age 51, unknown 119.7
1796 Male, age 53, unknown 102.3
2664 Male, age 75, both hemispheres 95.4
2261 Male, age 18, unknown 95.1
2087 Female, age 72, unknown 85.4
Ventral tegmental area
nTPM: 120.2
2223 Female, age 72, unknown 169.6
2410 Female, age 72, unknown 143.0
2218 Male, age 76, both hemispheres 105.9
2021 Male, age 53, unknown 103.5
1942 Male, age 51, unknown 103.1
1915 Female, age 42, unknown 95.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 44.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 44.5
Samples: 139

Max nTPM: 123.5
Min nTPM: 14.8
Std nTPM: 19.9
Median nTPM: 40.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 123.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 99.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 91.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 89.2
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 87.0
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 86.1
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 84.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 84.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 84.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 79.6
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 78.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 363.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 363.9
FF:10158-103A5 76 years, female 363.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 165.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 148.0
Samples: 4

Max nTPM: 217.7
Min nTPM: 119.1
Sample A Female 124.6
Sample B Female 130.4
Sample C Male 119.1
Sample D Male 217.7
Midbrain
nTPM: 165.5
Samples: 4

Max nTPM: 310.4
Min nTPM: 105.9
Sample A Female 310.4
Sample B Female 132.7
Sample C Male 112.8
Sample D Male 105.9
Periaqueductal gray
nTPM: 104.6
Samples: 3

Max nTPM: 114.5
Min nTPM: 85.9
Sample B Female 114.5
Sample C Male 85.9
Sample D Male 113.5
Superior colliculi
nTPM: 121.9
Samples: 4

Max nTPM: 149.6
Min nTPM: 87.5
Sample A Female 118.0
Sample B Female 87.5
Sample C Male 132.3
Sample D Male 149.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 47.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 47.1
Samples: 4

Max nTPM: 52.7
Min nTPM: 41.9
Sample A Male 41.9
Sample B Male 44.4
Sample C Female 52.7
Sample D Female 49.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.2
70203615 Antisense, RP_050519_02_A05, Mouse strain C57BL/6J (56 days, male) 2.2

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