We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
HNRNPD
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • HNRNPD
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:169.0 nTPM
HPA:169.0 nTPM
GTEx:147.5 nTPM
FANTOM5:281.5 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA004911
Glandular cells High



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

169.0
overview
Male, age 65
Small intestine sample 232
nTPM: 190.3
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 140.2
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 163.8
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 181.6

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

147.5
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 147.5
Samples: 187

Max nTPM: 236.2
Min nTPM: 96.8
Std nTPM: 26.3
Median nTPM: 144.9
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 236.2
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 227.3
GTEX-183FY-1626-SM-793D8 20-29 years, male 211.6
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 211.6
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 208.8
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 206.8
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 205.8
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 203.5
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 201.6
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 191.5
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 191.3
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 189.5
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 187.4
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 185.9
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 185.2
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 184.4
GTEX-14PK6-1626-SM-6871I 70-79 years, female 182.4
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 180.3
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 180.2
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 178.8
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 177.8
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 177.7
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 177.7
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 176.7
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 176.6
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 176.1
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 175.7
GTEX-144GM-1026-SM-79OKU 20-29 years, male 175.0
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 172.6
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 172.2
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 171.8
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 171.7
GTEX-1C475-1426-SM-793CH 40-49 years, female 171.0
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 170.6
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 169.9
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 169.4
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 169.1
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 168.9
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 168.8
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 168.2
GTEX-13O61-1326-SM-5KM31 60-69 years, male 167.8
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 167.6
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 166.9
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 166.6
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 165.6
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 165.3
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 164.7
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 164.7
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 164.2
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 163.8
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 163.1
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 162.6
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 161.3
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 161.0
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 161.0
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 160.8
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 159.8
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 159.2
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 159.2
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 158.6
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 158.0
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 157.7
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 157.1
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 156.6
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 156.4
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 154.5
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 153.5
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 153.4
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 153.2
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 153.0
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 153.0
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 153.0
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 152.8
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 152.4
GTEX-14PN3-2026-SM-68729 60-69 years, female 152.2
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 151.9
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 151.0
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 150.8
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 150.5
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 148.9
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 148.7
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 148.4
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 148.3
GTEX-1122O-1326-SM-5H11F 60-69 years, female 148.2
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 148.2
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 148.2
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 148.2
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 147.0
GTEX-14PKU-1626-SM-6871C 40-49 years, female 146.6
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 146.4
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 145.8
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 145.6
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 145.6
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 144.9
GTEX-13113-1226-SM-5EGHT 60-69 years, female 144.5
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 144.5
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 143.5
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 143.4
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 143.0
GTEX-ZTSS-0926-SM-59865 40-49 years, male 142.7
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 141.9
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 141.7
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 140.6
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 140.4
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 140.3
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 140.3
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 140.2
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 140.1
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 139.6
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 139.6
GTEX-YFCO-1326-SM-664NV 40-49 years, male 139.3
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 139.2
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 138.6
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 138.6
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 138.6
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 138.1
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 137.1
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 135.9
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 135.9
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 135.8
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 135.6
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 135.4
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 135.3
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 135.2
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 135.1
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 134.1
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 134.0
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 133.8
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 133.8
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 133.4
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 133.0
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 132.9
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 132.7
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 132.4
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 132.3
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 132.0
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 131.6
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 130.9
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 130.7
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 130.6
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 130.3
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 130.2
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 129.8
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 128.1
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 127.6
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 127.5
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 126.1
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 125.9
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 125.8
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 125.6
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 125.5
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 125.4
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 125.3
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 125.1
GTEX-13111-1426-SM-5DUW3 50-59 years, male 124.8
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 124.8
GTEX-117YX-0326-SM-5GICL 50-59 years, male 124.6
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 122.8
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 120.4
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 120.2
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 120.1
GTEX-1192X-2526-SM-59868 50-59 years, male 120.0
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 119.8
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 119.5
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 117.2
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 117.2
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 116.8
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 116.6
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 114.7
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 112.8
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 111.7
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 110.8
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 109.8
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 109.4
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 108.9
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 105.9
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 104.5
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 104.3
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 103.9
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 103.9
GTEX-111YS-1426-SM-5GID8 60-69 years, male 103.5
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 103.5
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 101.8
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 100.1
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 99.5
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 97.4
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 96.8
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

281.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 281.5
FF:10024-101D6 15,40,85 years, mixed 281.5

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org