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SCARB2
HPA
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  • SCARB2
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

SCARB2
Synonyms CD36L2, HLGP85, LIMP-2, LIMPII, SR-BII
Gene descriptioni

Full gene name according to HGNC.

Scavenger receptor class B member 2
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Disease related genes
Human disease related genes
Potential drug targets
Transporters
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 4
Cytoband q21.1
Chromosome location (bp) 76158737 - 76234536
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

10
Ensembl ENSG00000138760 (version 109)
Entrez gene 950
HGNC HGNC:1665
UniProt Q14108 (UniProt - Evidence at protein level)
neXtProt NX_Q14108
GeneCards SCARB2
Antibodypedia SCARB2 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Acts as a lysosomal receptor for glucosylceramidase (GBA1) targeting.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Host cell receptor for virus entry, Receptor
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Host-virus interaction
Gene summary (Entrez)i

Useful information about the gene from Entrez

The protein encoded by this gene is a type III glycoprotein that is located primarily in limiting membranes of lysosomes and endosomes. Earlier studies in mice and rat suggested that this protein may participate in membrane transportation and the reorganization of endosomal/lysosomal compartment. The protein deficiency in mice was reported to impair cell membrane transport processes and cause pelvic junction obstruction, deafness, and peripheral neuropathy. Further studies in human showed that this protein is a ubiquitously expressed protein and that it is involved in the pathogenesis of HFMD (hand, foot, and mouth disease) caused by enterovirus-71 and possibly by coxsackievirus A16. Mutations in this gene caused an autosomal recessive progressive myoclonic epilepsy-4 (EPM4), also known as action myoclonus-renal failure syndrome (AMRF). Alternatively spliced transcript variants encoding different isoforms have been found for this gene.[provided by RefSeq, Feb 2011]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
SCARB2-201
ENSP00000264896
ENST00000264896
Q14108
[Direct mapping] Lysosome membrane protein 2
Show all
A0A024RDG6
[Target identity:100%; Query identity:100%] Scavenger receptor class B, member 2, isoform CRA_a
Show all
Transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Disease related genes
Potential drug targets
Human disease related genes
   Nervous system diseases
   Epilepsy
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0000139 [Golgi membrane]
GO:0001618 [virus receptor activity]
GO:0001786 [phosphatidylserine binding]
GO:0004888 [transmembrane signaling receptor activity]
GO:0005044 [scavenger receptor activity]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005764 [lysosome]
GO:0005765 [lysosomal membrane]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005886 [plasma membrane]
GO:0005925 [focal adhesion]
GO:0006622 [protein targeting to lysosome]
GO:0006898 [receptor-mediated endocytosis]
GO:0007605 [sensory perception of sound]
GO:0010008 [endosome membrane]
GO:0010467 [gene expression]
GO:0010976 [positive regulation of neuron projection development]
GO:0015485 [cholesterol binding]
GO:0015917 [aminophospholipid transport]
GO:0016020 [membrane]
GO:0019899 [enzyme binding]
GO:0030666 [endocytic vesicle membrane]
GO:0030669 [clathrin-coated endocytic vesicle membrane]
GO:0031210 [phosphatidylcholine binding]
GO:0031902 [late endosome membrane]
GO:0038024 [cargo receptor activity]
GO:0042803 [protein homodimerization activity]
GO:0043202 [lysosomal lumen]
GO:0043471 [regulation of cellular carbohydrate catabolic process]
GO:0046718 [viral entry into host cell]
GO:0051087 [chaperone binding]
GO:0070062 [extracellular exosome]
GO:1904978 [regulation of endosome organization]
GO:1905123 [regulation of glucosylceramidase activity]
GO:1905671 [regulation of lysosome organization]
Show all
478 aa
54.3 kDa
No 1
SCARB2-202
ENSP00000399154
ENST00000452464
Q14108
[Direct mapping] Lysosome membrane protein 2
Show all
Transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Disease related genes
Potential drug targets
Human disease related genes
   Nervous system diseases
   Epilepsy
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0000139 [Golgi membrane]
GO:0001618 [virus receptor activity]
GO:0001786 [phosphatidylserine binding]
GO:0004888 [transmembrane signaling receptor activity]
GO:0005044 [scavenger receptor activity]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005764 [lysosome]
GO:0005765 [lysosomal membrane]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005886 [plasma membrane]
GO:0005925 [focal adhesion]
GO:0006622 [protein targeting to lysosome]
GO:0006898 [receptor-mediated endocytosis]
GO:0010008 [endosome membrane]
GO:0010976 [positive regulation of neuron projection development]
GO:0015485 [cholesterol binding]
GO:0015917 [aminophospholipid transport]
GO:0016020 [membrane]
GO:0019899 [enzyme binding]
GO:0030666 [endocytic vesicle membrane]
GO:0030669 [clathrin-coated endocytic vesicle membrane]
GO:0031210 [phosphatidylcholine binding]
GO:0031902 [late endosome membrane]
GO:0038024 [cargo receptor activity]
GO:0042803 [protein homodimerization activity]
GO:0043202 [lysosomal lumen]
GO:0043471 [regulation of cellular carbohydrate catabolic process]
GO:0046718 [viral entry into host cell]
GO:0070062 [extracellular exosome]
GO:1904978 [regulation of endosome organization]
GO:1905123 [regulation of glucosylceramidase activity]
GO:1905671 [regulation of lysosome organization]
Show all
335 aa
37.8 kDa
No 1
SCARB2-207
ENSP00000492288
ENST00000638295
A0A1W2PRF6
[Direct mapping] Lysosome membrane protein 2
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Human disease related genes
   Nervous system diseases
   Epilepsy
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005044 [scavenger receptor activity]
GO:0005764 [lysosome]
GO:0006897 [endocytosis]
GO:0016020 [membrane]
Show all
320 aa
36.3 kDa
No 1
SCARB2-211
ENSP00000491728
ENST00000638603
A0A1W2PPU6
[Direct mapping] Lysosome membrane protein 2
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Human disease related genes
   Nervous system diseases
   Epilepsy
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005044 [scavenger receptor activity]
GO:0005764 [lysosome]
GO:0006897 [endocytosis]
GO:0016020 [membrane]
Show all
438 aa
49.6 kDa
No 1
SCARB2-215
ENSP00000492831
ENST00000639145
A0A1W2PS43
[Direct mapping] Lysosome membrane protein 2
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Human disease related genes
   Nervous system diseases
   Epilepsy
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005044 [scavenger receptor activity]
GO:0005764 [lysosome]
GO:0006897 [endocytosis]
GO:0016020 [membrane]
Show all
475 aa
53.9 kDa
No 1
SCARB2-219
ENSP00000491792
ENST00000639738
A0A1W2PQL5
[Direct mapping] Lysosome membrane protein 2
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   2TM proteins predicted by MDM
Human disease related genes
   Nervous system diseases
   Epilepsy
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005044 [scavenger receptor activity]
GO:0005764 [lysosome]
GO:0006897 [endocytosis]
GO:0016020 [membrane]
Show all
174 aa
19.6 kDa
No 2
SCARB2-222
ENSP00000492737
ENST00000640634
A0A1W2PRS1
[Direct mapping] Lysosome membrane protein 2
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Human disease related genes
   Nervous system diseases
   Epilepsy
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005044 [scavenger receptor activity]
GO:0005764 [lysosome]
GO:0006897 [endocytosis]
GO:0016020 [membrane]
Show all
519 aa
58 kDa
No 1
SCARB2-223
ENSP00000492246
ENST00000640640
A0A1W2PQR6
[Direct mapping] Lysosome membrane protein 2
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Human disease related genes
   Nervous system diseases
   Epilepsy
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005044 [scavenger receptor activity]
GO:0005764 [lysosome]
GO:0006897 [endocytosis]
GO:0016020 [membrane]
Show all
449 aa
51 kDa
No 1
SCARB2-224
ENSP00000491653
ENST00000640880
A0A1W2PPX6
[Direct mapping] Lysosome membrane protein 2
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Human disease related genes
   Nervous system diseases
   Epilepsy
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0016020 [membrane]
Show all
95 aa
10.7 kDa
No 1
SCARB2-227
ENSP00000492004
ENST00000640957
A0A1W2PQB7
[Direct mapping] Lysosome membrane protein 2
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Human disease related genes
   Nervous system diseases
   Epilepsy
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005044 [scavenger receptor activity]
GO:0005764 [lysosome]
GO:0006897 [endocytosis]
GO:0016020 [membrane]
Show all
470 aa
53.4 kDa
No 1

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