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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein expression
Retinai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Ganglion cells : Not detected
Inner nuclear layer: Not detected
Inner plexiform layer: Not detected
Limiting membrane: Not detected
Nerve fiber layer: Not detected
Outer plexiform layer: Not detected
Photoreceptor cells: High
Pigment epithelial cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:883.2 nTPM
GTEx:883.2 nTPM
FANTOM5:116.7 Scaled Tags Per Million
Pig:998.3 nTPM
Mouse:125.9 nTPM

RETINA - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA045118
Pigment epithelial cells Not detected
Photoreceptor cells High
Limiting membrane Not detected
Outer plexiform layer Not detected
Inner nuclear layer Not detected
Inner plexiform layer Not detected
Ganglion cells Not detected
Nerve fiber layer Not detected

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

883.2
GTEx sample id Sample description nTPM
Retina
Average nTPM: 883.2
Samples: 105

Max nTPM: 1401.4
Min nTPM: 516.6
Std nTPM: 179.6
Median nTPM:
139_1 64 years, female 1401.4
35_1 74 years, female 1337.3
4_1 88 years, female 1296.9
153_1 70 years, female 1256.8
375_1 74 years, female 1218.1
145_1 84 years, male 1202.9
6_1 73 years, female 1156.2
162_1 79 years, female 1153.4
386_1 76 years, male 1146.8
322_1 76 years, male 1139.0
319_1 81 years, male 1125.7
119_1 70 years, female 1123.3
43_1 64 years, female 1120.6
379_1 60 years, male 1110.7
490_1 67 years, female 1095.5
18_1 88 years, male 1075.4
396_1 62 years, male 1073.7
109_1 81 years, female 1055.3
350_1 84 years, female 1039.6
89_1 63 years, male 1025.7
466_1 57 years, female 1025.5
246_1 77 years, male 998.1
149_1 88 years, male 986.4
120_1 70 years, female 984.5
321_1 62 years, female 977.3
311_1 78 years, male 976.5
447_1 81 years, male 974.8
389_1 86 years, female 974.0
99_1 64 years, male 973.6
468_1 89 years, male 964.8
17_1 71 years, male 960.7
229_1 69 years, female 958.7
243_1 75 years, male 944.6
377_1 82 years, female 944.3
501_1 88 years, male 941.5
414_1 84 years, female 939.7
2_1 77 years, female 939.3
315_1 62 years, female 939.0
405_1 91 years, male 936.0
347_1 72 years, male 932.7
413_1 59 years, female 922.3
117_1 61 years, male 916.7
316_1 62 years, male 916.4
406_1 79 years, male 914.2
173_1 67 years, male 907.8
81_1 67 years, male 907.7
324_1 76 years, male 904.0
142_1 61 years, female 898.5
335_1 73 years, female 898.4
9_1 66 years, female 886.0
318_1 68 years, male 882.0
265_1 87 years, male 881.0
415_1 77 years, female 870.9
217_1 76 years, male 857.4
491_1 89 years, female 856.3
348_1 84 years, male 856.0
254_1 77 years, female 854.8
404_1 82 years, female 853.8
384_1 83 years, male 852.8
518_1 75 years, female 846.9
355_1 70 years, female 846.0
320_1 89 years, female 843.9
349_1 83 years, male 838.0
351_1 91 years, male 837.0
266_1 85 years, male 835.9
313_1 79 years, female 828.7
137_1 83 years, male 827.0
425_1 59 years, female 817.9
480_1 63 years, male 817.6
126_1 63 years, male 817.1
218_1 71 years, female 813.1
292_1 71 years, male 810.2
526_1 61 years, male 808.2
177_1 74 years, male 807.6
115_1 83 years, male 807.3
352_1 62 years, male 806.9
237_1 82 years, male 782.7
517_1 88 years, male 767.7
495_1 57 years, female 759.9
41_1 94 years, female 753.2
251_1 78 years, male 751.8
163_1 78 years, male 746.9
499_1 55 years, female 740.6
356_1 87 years, female 740.1
189_1 76 years, male 740.0
32_1 67 years, male 727.5
503_1 68 years, male 707.5
264_1 73 years, female 700.8
295_1 61 years, female 687.6
293_1 68 years, female 679.4
354_1 81 years, female 674.8
452_1 88 years, female 673.9
307_1 66 years, female 662.2
286_1 68 years, female 661.1
394_1 75 years, female 655.4
291_1 76 years, male 655.0
353_1 82 years, female 649.2
317_1 60 years, male 646.7
42_1 85 years, male 626.1
376_1 75 years, female 582.0
172_1 72 years, female 560.8
288_1 66 years, female 542.4
314_1 67 years, male 542.0
506_1 65 years, male 526.5
308_1 70 years, female 516.6
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

116.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 116.7
FF:10030-101E3 24-65 years, mixed 116.7

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

998.3
Pig sample Sample description nTPM
Retina
nTPM: 998.4
Samples: 4

Max nTPM: 1345.4
Min nTPM: 796.4
Sample A Female 1345.4
Sample B Female 844.4
Sample C Male 1007.2
Sample D Male 796.4

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

125.9
Mouse sample Sample description nTPM
Retina
nTPM: 125.9
Samples: 4

Max nTPM: 149.9
Min nTPM: 93.7
Sample A Male 149.9
Sample B Male 123.8
Sample C Female 136.3
Sample D Female 93.7

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