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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:102.0 nTPM
HPA Brain:225.2 nTPM
GTEx:102.0 nTPM
FANTOM5:149.2 Scaled Tags Per Million
Pig:417.5 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

225.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 225.2
2194 Female, age 79, both hemispheres 287.2
1981 Female, age 72, midline 230.2
2565 Male, age 75, midline 219.8
2048 Male, age 55, midline 196.8
2816 Male, age 47, midline 192.3
Cervical spinal cord, dorsal horn
nTPM: 212.1
2173 Female, age 72, unknown 262.2
2297 Male, age 75, both hemispheres 258.3
1877 Male, age 55, unknown 199.2
2069 Male, age 47, both hemispheres 187.7
2296 Male, age 66, both hemispheres 183.7
2721 Male, age 90, both hemispheres 181.7
Cervical spinal cord, ventral horn
nTPM: 205.1
2820 Female, age 79, both hemispheres 276.8
2068 Male, age 55, unknown 251.2
2098 Female, age 72, unknown 197.4
2809 Male, age 90, both hemispheres 193.7
2480 Male, age 75, both hemispheres 163.4
2295 Male, age 66, both hemispheres 148.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

102.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 102.0
Samples: 159

Max nTPM: 241.3
Min nTPM: 58.9
Std nTPM: 30.8
Median nTPM: 96.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 241.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 223.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 221.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 193.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 193.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 171.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 168.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 162.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 160.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 152.1
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 151.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 149.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 149.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 147.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 141.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 139.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 138.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 135.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 135.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 134.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 133.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 131.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 131.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 130.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 128.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 124.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 123.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 123.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 121.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 119.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 119.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 114.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 114.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 114.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 112.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 112.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 112.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 111.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 110.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 110.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 110.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 110.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 109.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 108.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 108.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 108.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 107.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 107.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 107.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 107.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 107.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 106.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 106.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 105.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 105.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 103.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 103.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 102.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 102.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 101.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 100.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 100.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 100.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 100.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 98.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 98.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 98.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 98.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 98.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 98.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 98.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 97.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 97.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 97.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 97.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 96.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 96.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 96.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 96.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 96.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 95.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 95.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 95.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 95.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 95.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 94.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 94.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 94.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 94.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 93.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 93.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 93.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 92.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 91.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 90.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 89.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 89.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 89.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 89.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 88.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 88.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 87.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 87.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 87.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 87.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 86.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 86.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 85.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 84.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 84.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 84.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 84.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 83.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 83.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 82.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 82.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 82.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 82.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 82.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 81.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 81.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 81.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 80.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 80.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 80.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 80.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 80.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 79.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 79.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 79.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 78.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 78.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 78.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 78.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 77.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 77.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 76.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 76.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 76.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 74.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 74.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 74.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 72.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 71.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 70.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 70.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 68.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 68.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 67.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 66.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 66.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 65.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 65.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 65.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 64.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 64.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 63.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 63.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 58.9
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

149.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 149.2
FF:10181-103D1 60 years, female 182.0
FF:10159-103A6 76 years, female 116.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

417.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 354.3
Samples: 4

Max nTPM: 412.4
Min nTPM: 305.1
Sample A Female 412.4
Sample B Female 308.4
Sample C Male 305.1
Sample D Male 391.2
Ventral spinal cord
nTPM: 417.6
Samples: 4

Max nTPM: 431.4
Min nTPM: 398.3
Sample A Female 419.2
Sample B Female 431.4
Sample C Male 421.3
Sample D Male 398.3

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