MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:40.4 nTPM
HPA Brain:116.6 nTPM
GTEx:40.4 nTPM
FANTOM5:41.8 Scaled Tags Per Million
Pig:95.4 nTPM
Mouse:95.5 nTPM
Allen mouse:3.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 116.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 89.2
1827 Male, age 72, unknown 102.8
2411 Female, age 72, unknown 99.3
2666 Male, age 74, left hemisphere 98.9
2219 Male, age 76, both hemispheres 94.3
2019 Male, age 18, unknown 93.2
1870 Female, age 42, unknown 89.4
1833 Male, age 53, unknown 84.5
1830 Male, age 51, unknown 78.2
2828 Female, age 72, unknown 77.8
2586 Male, age 75, left hemisphere 73.3
Dorsal raphe nucleus
nTPM: 104.4
2047 Male, age 72, unknown 125.4
2298 Female, age 72, unknown 110.0
2750 Male, age 76, both hemispheres 106.9
1828 Male, age 53, unknown 105.7
2016 Female, age 72, unknown 73.9
Inferior colliculus
nTPM: 86.9
1848 Female, age 42, unknown 94.8
2097 Female, age 72, unknown 88.6
2849 Male, age 72, unknown 87.9
1890 Male, age 53, unknown 76.3
Median raphe nucleus
nTPM: 116.6
2220 Male, age 76, midline 116.6
Periaquaductal grey, anterior
nTPM: 101.3
1947 Male, age 18, unknown 113.0
2502 Female, age 75, unknown 99.8
1795 Male, age 51, unknown 91.2
Periaquaductal grey, dorsal
nTPM: 86.7
1840 Male, age 53, unknown 89.9
1831 Male, age 72, unknown 87.8
2850 Male, age 76, both hemispheres 86.4
2464 Female, age 72, unknown 82.6
Periaquaductal grey, lateral
nTPM: 74.2
2140 Male, age 76, both hemispheres 78.5
2053 Male, age 18, unknown 77.6
2272 Male, age 74, both hemispheres 66.6
Pretectal area
nTPM: 99.7
1816 Male, age 51, unknown 128.0
1944 Female, age 72, unknown 119.1
2007 Male, age 72, unknown 117.0
1817 Female, age 42, unknown 111.7
1815 Male, age 53, unknown 104.1
2667 Female, age 75, unknown 102.1
2224 Female, age 72, unknown 96.4
2273 Male, age 74, both hemispheres 85.8
2825 Male, age 18, unknown 83.4
2407 Male, age 75, both hemispheres 77.8
2316 Male, age 76, right hemisphere 71.8
Red nucleus
nTPM: 80.7
1821 Female, age 72, unknown 104.5
2725 Female, age 75, unknown 91.2
2588 Male, age 74, left hemisphere 84.7
2785 Male, age 18, unknown 82.6
1865 Male, age 51, unknown 81.6
1954 Female, age 42, unknown 81.4
2823 Male, age 76, right hemisphere 79.2
2503 Female, age 72, unknown 77.1
2769 Male, age 72, unknown 74.1
2227 Male, age 72, unknown 73.9
2584 Male, age 75, left hemisphere 69.5
1904 Male, age 53, unknown 68.6
Substantia nigra
nTPM: 107.1
1941 Male, age 53, unknown 145.2
1916 Female, age 42, unknown 141.2
2409 Female, age 72, unknown 125.4
1851 Male, age 51, unknown 117.5
1889 Female, age 72, unknown 117.0
2241 Male, age 72, unknown 107.5
2699 Male, age 18, unknown 92.2
2583 Male, age 75, right hemisphere 81.0
2590 Female, age 75, unknown 77.8
2665 Male, age 74, both hemispheres 66.2
Superior colliculus
nTPM: 85.0
1895 Male, age 76, right hemisphere 99.4
2587 Male, age 74, left hemisphere 99.3
2087 Female, age 72, unknown 96.7
2668 Female, age 75, unknown 95.6
1796 Male, age 53, unknown 88.3
2261 Male, age 18, unknown 87.3
1839 Male, age 51, unknown 85.6
2664 Male, age 75, both hemispheres 73.9
1913 Female, age 42, unknown 69.2
1995 Male, age 72, unknown 54.6
Ventral tegmental area
nTPM: 98.0
2218 Male, age 76, both hemispheres 120.2
2410 Female, age 72, unknown 117.9
1915 Female, age 42, unknown 103.9
2223 Female, age 72, unknown 86.6
2021 Male, age 53, unknown 80.5
1942 Male, age 51, unknown 78.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 40.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 40.4
Samples: 139

Max nTPM: 140.7
Min nTPM: 16.0
Std nTPM: 20.3
Median nTPM: 34.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 140.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 124.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 112.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 98.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 83.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 79.2
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 72.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 72.1
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 71.1
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 65.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 64.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 41.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 41.8
FF:10158-103A5 76 years, female 41.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 95.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 93.6
Samples: 4

Max nTPM: 131.2
Min nTPM: 53.1
Sample A Female 131.2
Sample B Female 67.9
Sample C Male 122.2
Sample D Male 53.1
Midbrain
nTPM: 95.5
Samples: 4

Max nTPM: 111.2
Min nTPM: 76.8
Sample A Female 76.8
Sample B Female 96.5
Sample C Male 111.2
Sample D Male 97.3
Periaqueductal gray
nTPM: 85.9
Samples: 3

Max nTPM: 100.5
Min nTPM: 77.8
Sample B Female 79.3
Sample C Male 100.5
Sample D Male 77.8
Superior colliculi
nTPM: 89.6
Samples: 4

Max nTPM: 128.3
Min nTPM: 46.3
Sample A Female 89.9
Sample B Female 46.3
Sample C Male 128.3
Sample D Male 94.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 95.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 95.5
Samples: 4

Max nTPM: 113.2
Min nTPM: 81.5
Sample A Male 81.5
Sample B Male 96.6
Sample C Female 113.2
Sample D Female 90.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.2
70919991 Antisense, RP_050713_02_E03, Mouse strain C57BL/6J (56 days, male) 3.2

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