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SINHCAF
HPA
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  • SINHCAF
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

SINHCAF
Synonyms C12orf14, FAM60A, TERA
Gene descriptioni

Full gene name according to HGNC.

SIN3-HDAC complex associated factor
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 12
Cytoband p11.21
Chromosome location (bp) 31280584 - 31327058
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

6
Ensembl ENSG00000139146 (version 109)
Entrez gene 58516
HGNC HGNC:30702
UniProt Q9NP50 (UniProt - Evidence at protein level)
neXtProt NX_Q9NP50
GeneCards SINHCAF
Antibodypedia SINHCAF antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Subunit of the Sin3 deacetylase complex (Sin3/HDAC), this subunit is important for the repression of genes encoding components of the TGF-beta signaling pathway 1, 2. Core component of a SIN3A complex (composed of at least SINHCAF, SIN3A, HDAC1, SAP30, RBBP4, OGT and TET1) present in embryonic stem (ES) cells. Promotes the stability of SIN3A and its presence on chromatin and is essential for maintaining the potential of ES cells to proliferate rapidly, while ensuring a short G1-phase of the cell cycle, thereby preventing premature lineage priming (By similarity).... show less
Gene summary (Entrez)i

Useful information about the gene from Entrez

Involved in negative regulation of cell migration. Part of Sin3 complex. [provided by Alliance of Genome Resources, Apr 2022]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
SINHCAF-201
ENSP00000337477
ENST00000337682
Q9NP50
[Direct mapping] SIN3-HDAC complex-associated factor
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000122 [negative regulation of transcription by RNA polymerase II]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0008284 [positive regulation of cell population proliferation]
GO:0016580 [Sin3 complex]
GO:0030336 [negative regulation of cell migration]
GO:0030512 [negative regulation of transforming growth factor beta receptor signaling pathway]
GO:0045596 [negative regulation of cell differentiation]
GO:1902455 [negative regulation of stem cell population maintenance]
GO:1902459 [positive regulation of stem cell population maintenance]
Show all
221 aa
24.9 kDa
No 0
SINHCAF-203
ENSP00000393279
ENST00000454658
Q9NP50
[Direct mapping] SIN3-HDAC complex-associated factor
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000122 [negative regulation of transcription by RNA polymerase II]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0008284 [positive regulation of cell population proliferation]
GO:0016580 [Sin3 complex]
GO:0030336 [negative regulation of cell migration]
GO:0030512 [negative regulation of transforming growth factor beta receptor signaling pathway]
GO:0045596 [negative regulation of cell differentiation]
GO:1902455 [negative regulation of stem cell population maintenance]
GO:1902459 [positive regulation of stem cell population maintenance]
Show all
221 aa
24.9 kDa
No 0
SINHCAF-205
ENSP00000443881
ENST00000539004
F5GZ82
[Direct mapping] SIN3-HDAC complex-associated factor
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
134 aa
15.1 kDa
No 0
SINHCAF-206
ENSP00000443697
ENST00000539409
Q9NP50
[Direct mapping] SIN3-HDAC complex-associated factor
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000122 [negative regulation of transcription by RNA polymerase II]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0008284 [positive regulation of cell population proliferation]
GO:0016580 [Sin3 complex]
GO:0030336 [negative regulation of cell migration]
GO:0030512 [negative regulation of transforming growth factor beta receptor signaling pathway]
GO:0045596 [negative regulation of cell differentiation]
GO:1902455 [negative regulation of stem cell population maintenance]
GO:1902459 [positive regulation of stem cell population maintenance]
Show all
73 aa
8.3 kDa
No 0
SINHCAF-207
ENSP00000439952
ENST00000542983
Q9NP50
[Direct mapping] SIN3-HDAC complex-associated factor
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000122 [negative regulation of transcription by RNA polymerase II]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0008284 [positive regulation of cell population proliferation]
GO:0016580 [Sin3 complex]
GO:0030336 [negative regulation of cell migration]
GO:0030512 [negative regulation of transforming growth factor beta receptor signaling pathway]
GO:0045596 [negative regulation of cell differentiation]
GO:1902455 [negative regulation of stem cell population maintenance]
GO:1902459 [positive regulation of stem cell population maintenance]
Show all
73 aa
8.3 kDa
No 0
SINHCAF-208
ENSP00000437363
ENST00000543615
F5H6U2
[Direct mapping] SIN3-HDAC complex-associated factor
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
126 aa
14.4 kDa
No 0

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