MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.7 nTPM
HPA Brain:19.0 nTPM
GTEx:11.7 nTPM
FANTOM5:12.3 Scaled Tags Per Million
Pig:19.0 nTPM
Mouse:9.0 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 19.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.6
2019 Male, age 18, unknown 16.4
1827 Male, age 72, unknown 14.4
2828 Female, age 72, unknown 13.7
2666 Male, age 74, left hemisphere 13.2
2586 Male, age 75, left hemisphere 12.9
1833 Male, age 53, unknown 9.9
1870 Female, age 42, unknown 9.1
2219 Male, age 76, both hemispheres 8.7
2411 Female, age 72, unknown 8.7
1830 Male, age 51, unknown 8.6
Dorsal raphe nucleus
nTPM: 9.6
2750 Male, age 76, both hemispheres 11.9
1828 Male, age 53, unknown 11.8
2298 Female, age 72, unknown 9.6
2016 Female, age 72, unknown 7.7
2047 Male, age 72, unknown 7.0
Inferior colliculus
nTPM: 12.0
2097 Female, age 72, unknown 15.2
1890 Male, age 53, unknown 14.6
1848 Female, age 42, unknown 10.6
2849 Male, age 72, unknown 7.4
Median raphe nucleus
nTPM: 11.8
2220 Male, age 76, midline 11.8
Periaquaductal grey, anterior
nTPM: 13.6
1795 Male, age 51, unknown 14.0
2502 Female, age 75, unknown 14.0
1947 Male, age 18, unknown 12.9
Periaquaductal grey, dorsal
nTPM: 11.1
1831 Male, age 72, unknown 16.2
2850 Male, age 76, both hemispheres 12.2
2464 Female, age 72, unknown 8.4
1840 Male, age 53, unknown 7.4
Periaquaductal grey, lateral
nTPM: 12.9
2053 Male, age 18, unknown 13.4
2272 Male, age 74, both hemispheres 12.9
2140 Male, age 76, both hemispheres 12.4
Pretectal area
nTPM: 19.0
1816 Male, age 51, unknown 36.2
1817 Female, age 42, unknown 34.9
2007 Male, age 72, unknown 29.2
1944 Female, age 72, unknown 26.3
1815 Male, age 53, unknown 19.4
2667 Female, age 75, unknown 12.7
2407 Male, age 75, both hemispheres 11.0
2224 Female, age 72, unknown 10.8
2316 Male, age 76, right hemisphere 10.4
2273 Male, age 74, both hemispheres 9.7
2825 Male, age 18, unknown 8.4
Red nucleus
nTPM: 15.0
2785 Male, age 18, unknown 18.9
1821 Female, age 72, unknown 17.6
1954 Female, age 42, unknown 16.6
1865 Male, age 51, unknown 15.9
1904 Male, age 53, unknown 15.6
2588 Male, age 74, left hemisphere 15.2
2503 Female, age 72, unknown 14.4
2725 Female, age 75, unknown 14.1
2227 Male, age 72, unknown 13.9
2769 Male, age 72, unknown 12.9
2823 Male, age 76, right hemisphere 12.7
2584 Male, age 75, left hemisphere 11.7
Substantia nigra
nTPM: 10.8
2665 Male, age 74, both hemispheres 20.3
1889 Female, age 72, unknown 19.6
2583 Male, age 75, right hemisphere 14.2
2590 Female, age 75, unknown 10.3
1941 Male, age 53, unknown 9.2
2409 Female, age 72, unknown 8.8
1851 Male, age 51, unknown 7.5
2699 Male, age 18, unknown 6.7
2241 Male, age 72, unknown 5.8
1916 Female, age 42, unknown 5.4
Superior colliculus
nTPM: 16.2
2261 Male, age 18, unknown 23.5
2087 Female, age 72, unknown 22.6
1913 Female, age 42, unknown 21.1
2668 Female, age 75, unknown 19.5
1995 Male, age 72, unknown 18.0
2587 Male, age 74, left hemisphere 15.9
1796 Male, age 53, unknown 13.4
1895 Male, age 76, right hemisphere 9.6
1839 Male, age 51, unknown 9.1
2664 Male, age 75, both hemispheres 9.1
Ventral tegmental area
nTPM: 10.0
2218 Male, age 76, both hemispheres 12.6
1942 Male, age 51, unknown 11.1
2223 Female, age 72, unknown 10.8
2021 Male, age 53, unknown 9.8
2410 Female, age 72, unknown 8.8
1915 Female, age 42, unknown 6.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 11.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.7
Samples: 139

Max nTPM: 44.4
Min nTPM: 3.7
Std nTPM: 6.1
Median nTPM: 10.4
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 44.4
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 33.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 30.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 29.0
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 28.0
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 27.8
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 27.8
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 25.2
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 23.2
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 20.7
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 20.7
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 12.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 12.3
FF:10158-103A5 76 years, female 12.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 19.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 15.3
Samples: 4

Max nTPM: 16.9
Min nTPM: 13.9
Sample A Female 13.9
Sample B Female 16.9
Sample C Male 14.3
Sample D Male 16.2
Midbrain
nTPM: 17.6
Samples: 4

Max nTPM: 25.3
Min nTPM: 12.9
Sample A Female 14.6
Sample B Female 12.9
Sample C Male 25.3
Sample D Male 17.6
Periaqueductal gray
nTPM: 11.9
Samples: 3

Max nTPM: 14.5
Min nTPM: 9.8
Sample B Female 11.3
Sample C Male 14.5
Sample D Male 9.8
Superior colliculi
nTPM: 19.1
Samples: 4

Max nTPM: 24.1
Min nTPM: 14.0
Sample A Female 20.7
Sample B Female 14.0
Sample C Male 24.1
Sample D Male 17.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 9.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.0
Samples: 4

Max nTPM: 10.5
Min nTPM: 7.5
Sample A Male 8.8
Sample B Male 9.3
Sample C Female 10.5
Sample D Female 7.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
75650864 Antisense, RP_060518_02_E05, Mouse strain C57BL/6J (56 days, male) 0.4
79632277 Antisense, RP_071204_01_B11, Mouse strain C57BL/6J (56 days, male) 0.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org