MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:35.9 nTPM
HPA Brain:126.1 nTPM
GTEx:35.9 nTPM
FANTOM5:428.7 Scaled Tags Per Million
Pig:99.2 nTPM
Mouse:61.0 nTPM
Allen mouse:9.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 126.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 105.1
1830 Male, age 51, unknown 131.2
1870 Female, age 42, unknown 131.2
2019 Male, age 18, unknown 129.6
2411 Female, age 72, unknown 112.1
1833 Male, age 53, unknown 111.7
2828 Female, age 72, unknown 92.3
2219 Male, age 76, both hemispheres 88.5
2586 Male, age 75, left hemisphere 87.2
2666 Male, age 74, left hemisphere 86.1
1827 Male, age 72, unknown 81.0
Dorsal raphe nucleus
nTPM: 86.1
2750 Male, age 76, both hemispheres 110.7
1828 Male, age 53, unknown 92.7
2016 Female, age 72, unknown 91.1
2047 Male, age 72, unknown 83.4
2298 Female, age 72, unknown 52.7
Inferior colliculus
nTPM: 88.6
1848 Female, age 42, unknown 103.8
1890 Male, age 53, unknown 88.7
2097 Female, age 72, unknown 83.2
2849 Male, age 72, unknown 78.8
Median raphe nucleus
nTPM: 75.1
2220 Male, age 76, midline 75.1
Periaquaductal grey, anterior
nTPM: 86.6
2502 Female, age 75, unknown 100.2
1947 Male, age 18, unknown 95.0
1795 Male, age 51, unknown 64.7
Periaquaductal grey, dorsal
nTPM: 72.2
2464 Female, age 72, unknown 86.1
1831 Male, age 72, unknown 72.2
2850 Male, age 76, both hemispheres 70.5
1840 Male, age 53, unknown 60.2
Periaquaductal grey, lateral
nTPM: 79.1
2272 Male, age 74, both hemispheres 97.9
2053 Male, age 18, unknown 76.9
2140 Male, age 76, both hemispheres 62.4
Pretectal area
nTPM: 89.1
2407 Male, age 75, both hemispheres 105.1
1817 Female, age 42, unknown 101.2
2667 Female, age 75, unknown 100.0
1815 Male, age 53, unknown 95.1
2007 Male, age 72, unknown 95.0
2273 Male, age 74, both hemispheres 92.2
2316 Male, age 76, right hemisphere 89.5
1944 Female, age 72, unknown 83.1
2825 Male, age 18, unknown 77.0
1816 Male, age 51, unknown 71.8
2224 Female, age 72, unknown 69.8
Red nucleus
nTPM: 126.1
1865 Male, age 51, unknown 152.9
1821 Female, age 72, unknown 152.6
1904 Male, age 53, unknown 151.3
1954 Female, age 42, unknown 139.1
2785 Male, age 18, unknown 135.4
2769 Male, age 72, unknown 126.2
2227 Male, age 72, unknown 122.7
2503 Female, age 72, unknown 118.7
2823 Male, age 76, right hemisphere 117.8
2584 Male, age 75, left hemisphere 104.5
2588 Male, age 74, left hemisphere 102.5
2725 Female, age 75, unknown 89.8
Substantia nigra
nTPM: 89.9
2583 Male, age 75, right hemisphere 115.6
1941 Male, age 53, unknown 102.5
1889 Female, age 72, unknown 102.0
1851 Male, age 51, unknown 91.8
2241 Male, age 72, unknown 91.0
2699 Male, age 18, unknown 89.5
2409 Female, age 72, unknown 88.2
2590 Female, age 75, unknown 84.8
1916 Female, age 42, unknown 77.9
2665 Male, age 74, both hemispheres 55.3
Superior colliculus
nTPM: 97.1
1913 Female, age 42, unknown 123.0
1995 Male, age 72, unknown 122.8
1895 Male, age 76, right hemisphere 107.5
2587 Male, age 74, left hemisphere 103.9
2668 Female, age 75, unknown 103.5
1839 Male, age 51, unknown 98.6
2087 Female, age 72, unknown 82.0
2664 Male, age 75, both hemispheres 79.5
1796 Male, age 53, unknown 78.4
2261 Male, age 18, unknown 71.7
Ventral tegmental area
nTPM: 95.1
2223 Female, age 72, unknown 123.4
2410 Female, age 72, unknown 118.4
1942 Male, age 51, unknown 90.2
2218 Male, age 76, both hemispheres 82.4
1915 Female, age 42, unknown 82.2
2021 Male, age 53, unknown 73.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 35.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 35.9
Samples: 139

Max nTPM: 93.1
Min nTPM: 15.3
Std nTPM: 13.9
Median nTPM: 32.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 93.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 81.0
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 79.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 76.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 73.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 65.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 65.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 63.3
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 62.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 61.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 59.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 428.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 428.7
FF:10158-103A5 76 years, female 428.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 99.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 76.2
Samples: 4

Max nTPM: 96.4
Min nTPM: 57.9
Sample A Female 79.8
Sample B Female 57.9
Sample C Male 70.6
Sample D Male 96.4
Midbrain
nTPM: 99.2
Samples: 4

Max nTPM: 133.6
Min nTPM: 76.3
Sample A Female 133.6
Sample B Female 76.3
Sample C Male 101.4
Sample D Male 85.4
Periaqueductal gray
nTPM: 61.7
Samples: 3

Max nTPM: 64.8
Min nTPM: 56.9
Sample B Female 63.4
Sample C Male 56.9
Sample D Male 64.8
Superior colliculi
nTPM: 91.1
Samples: 4

Max nTPM: 105.3
Min nTPM: 68.4
Sample A Female 93.4
Sample B Female 68.4
Sample C Male 105.3
Sample D Male 97.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 61.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 61.1
Samples: 4

Max nTPM: 65.3
Min nTPM: 54.9
Sample A Male 54.9
Sample B Male 62.2
Sample C Female 65.3
Sample D Female 61.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 9.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.0
71022744 Antisense, RP_050719_01_E04, Mouse strain C57BL/6J (56 days, male) 9.0

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