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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: Not detected
Enterocytes: Not detected
Enterocytes - Microvilli: Not detected
Goblet cells: Not detected
Paneth cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:65.8 nTPM
HPA:49.6 nTPM
GTEx:65.8 nTPM
FANTOM5:97.3 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA005573
Endocrine cells Not detected
Enterocytes Not detected
Enterocytes - Microvilli Not detected
Goblet cells Not detected
Paneth cells Not detected


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

49.6
overview
Male, age 65
Small intestine sample 232
nTPM: 32.2
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 49.9
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 59.8
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 56.4

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

65.8
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 65.8
Samples: 187

Max nTPM: 572.8
Min nTPM: 23.4
Std nTPM: 56.5
Median nTPM: 49.2
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 572.8
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 303.3
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 289.6
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 263.4
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 213.0
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 197.0
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 169.0
GTEX-13111-1426-SM-5DUW3 50-59 years, male 163.6
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 142.3
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 139.2
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 124.3
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 121.6
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 121.6
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 120.9
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 119.2
GTEX-144GM-1026-SM-79OKU 20-29 years, male 118.3
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 117.6
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 113.9
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 112.7
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 112.6
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 110.3
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 109.6
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 108.3
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 107.5
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 101.1
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 100.3
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 99.1
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 97.6
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 93.7
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 92.9
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 91.7
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 91.0
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 90.6
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 87.0
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 85.2
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 84.5
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 80.6
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 79.9
GTEX-1192X-2526-SM-59868 50-59 years, male 79.8
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 79.4
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 77.9
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 75.4
GTEX-14PK6-1626-SM-6871I 70-79 years, female 74.5
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 74.1
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 73.3
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 73.1
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 70.3
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 69.9
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 69.8
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 69.3
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 68.8
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 67.4
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 67.0
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 66.3
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 66.0
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 65.8
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 64.9
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 64.3
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 62.8
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 62.7
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 62.7
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 62.5
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 61.4
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 61.2
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 60.3
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 60.1
GTEX-1C475-1426-SM-793CH 40-49 years, female 59.2
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 58.5
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 57.6
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 57.5
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 57.2
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 56.6
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 56.3
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 56.2
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 56.1
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 55.8
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 55.3
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 55.2
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 55.2
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 54.6
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 54.2
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 53.5
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 53.4
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 52.5
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 52.2
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 52.2
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 52.1
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 51.7
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 51.6
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 51.3
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 51.1
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 50.9
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 49.4
GTEX-183FY-1626-SM-793D8 20-29 years, male 49.2
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 49.0
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 48.9
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 48.7
GTEX-YFCO-1326-SM-664NV 40-49 years, male 48.6
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 48.4
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 48.2
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 48.1
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 47.4
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 47.1
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 46.9
GTEX-117YX-0326-SM-5GICL 50-59 years, male 46.6
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 46.6
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 46.5
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 45.5
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 45.5
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 45.2
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 44.9
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 44.7
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 44.3
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 44.0
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 44.0
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 43.8
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 43.1
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 43.0
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 43.0
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 43.0
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 42.7
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 42.6
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 42.3
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 41.4
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 40.9
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 40.9
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 40.8
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 40.4
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 40.3
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 40.3
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 40.2
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 40.1
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 39.9
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 39.7
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 39.6
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 39.3
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 39.1
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 38.5
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 37.8
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 37.8
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 37.6
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 37.3
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 37.2
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 37.0
GTEX-13113-1226-SM-5EGHT 60-69 years, female 36.8
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 36.8
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 36.7
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 36.6
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 36.4
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 36.3
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 35.9
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 35.8
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 35.6
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 35.2
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 35.1
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 35.0
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 35.0
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 34.8
GTEX-1122O-1326-SM-5H11F 60-69 years, female 34.3
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 34.3
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 34.3
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 33.9
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 33.9
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 33.5
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 33.2
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 32.5
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 32.2
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 32.0
GTEX-14PN3-2026-SM-68729 60-69 years, female 31.7
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 31.7
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 31.5
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 31.2
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 31.0
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 31.0
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 30.3
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 30.2
GTEX-14PKU-1626-SM-6871C 40-49 years, female 30.0
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 29.9
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 29.1
GTEX-13O61-1326-SM-5KM31 60-69 years, male 28.5
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 28.4
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 27.1
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 26.7
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 26.6
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 26.2
GTEX-111YS-1426-SM-5GID8 60-69 years, male 23.5
GTEX-ZTSS-0926-SM-59865 40-49 years, male 23.4
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

97.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 97.3
FF:10024-101D6 15,40,85 years, mixed 97.3

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