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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:675.1 nTPM
HPA Brain:351.8 nTPM
GTEx:675.1 nTPM
FANTOM5:196.8 Scaled Tags Per Million

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

351.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 302.0
1981 Female, age 72, midline 404.9
2194 Female, age 79, both hemispheres 320.9
2565 Male, age 75, midline 318.4
2816 Male, age 47, midline 259.8
2048 Male, age 55, midline 206.2
Cervical spinal cord, dorsal horn
nTPM: 278.0
2173 Female, age 72, unknown 402.4
2296 Male, age 66, both hemispheres 330.4
2069 Male, age 47, both hemispheres 306.2
1877 Male, age 55, unknown 241.4
2297 Male, age 75, both hemispheres 210.6
2721 Male, age 90, both hemispheres 177.1
Cervical spinal cord, ventral horn
nTPM: 351.8
2098 Female, age 72, unknown 476.3
2809 Male, age 90, both hemispheres 443.0
2480 Male, age 75, both hemispheres 362.7
2295 Male, age 66, both hemispheres 291.7
2068 Male, age 55, unknown 283.5
2820 Female, age 79, both hemispheres 253.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

675.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 675.1
Samples: 159

Max nTPM: 1624.3
Min nTPM: 249.0
Std nTPM: 206.2
Median nTPM: 659.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1624.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1368.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1223.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1197.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1099.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1088.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1068.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1015.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1010.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 986.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 962.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 959.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 957.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 917.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 917.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 912.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 898.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 891.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 890.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 887.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 883.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 877.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 863.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 862.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 855.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 851.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 841.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 831.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 824.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 824.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 822.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 820.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 819.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 818.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 813.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 809.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 807.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 805.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 804.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 803.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 803.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 803.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 795.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 792.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 788.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 787.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 785.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 780.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 765.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 757.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 752.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 748.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 742.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 740.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 738.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 738.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 731.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 718.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 718.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 717.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 715.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 710.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 706.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 704.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 703.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 703.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 697.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 697.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 691.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 690.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 690.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 690.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 684.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 681.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 680.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 677.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 675.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 665.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 660.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 659.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 658.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 653.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 651.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 649.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 649.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 649.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 641.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 636.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 633.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 630.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 629.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 626.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 625.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 622.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 622.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 620.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 604.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 598.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 593.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 592.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 588.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 586.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 581.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 581.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 579.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 565.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 558.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 555.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 545.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 541.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 541.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 537.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 534.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 533.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 531.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 530.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 530.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 530.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 529.4
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 523.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 522.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 521.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 520.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 519.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 516.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 514.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 513.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 512.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 502.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 497.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 496.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 495.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 486.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 484.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 480.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 479.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 479.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 470.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 467.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 463.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 459.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 459.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 458.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 457.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 456.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 449.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 418.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 410.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 407.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 393.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 393.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 367.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 349.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 333.5
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 330.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 327.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 309.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 268.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 249.0
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

196.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 196.8
FF:10181-103D1 60 years, female 246.1
FF:10159-103A6 76 years, female 147.6

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