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TISSUE SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:576.6 nTPM
HPA:466.8 nTPM
GTEx:576.6 nTPM
FANTOM5:396.3 Scaled Tags Per Million

SMALL INTESTINE - Annotated protein expression
Pending normal tissue analysis

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

466.8
overview
Male, age 65
Small intestine sample 232
nTPM: 420.6
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 529.9
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 464.4
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 452.3

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

576.6
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 576.6
Samples: 187

Max nTPM: 1117.7
Min nTPM: 281.7
Std nTPM: 134.2
Median nTPM: 544.4
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 1117.7
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 957.0
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 901.8
GTEX-111YS-1426-SM-5GID8 60-69 years, male 863.4
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 861.2
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 848.7
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 845.8
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 844.6
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 830.1
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 829.0
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 826.6
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 817.1
GTEX-YFCO-1326-SM-664NV 40-49 years, male 811.8
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 810.9
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 791.5
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 785.5
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 785.0
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 768.0
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 765.6
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 762.0
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 760.5
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 747.6
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 745.9
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 745.6
GTEX-14PK6-1626-SM-6871I 70-79 years, female 743.5
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 742.7
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 741.8
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 736.8
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 727.7
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 726.2
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 725.4
GTEX-1192X-2526-SM-59868 50-59 years, male 723.8
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 704.2
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 701.6
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 699.8
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 690.6
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 688.1
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 687.1
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 682.0
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 678.7
GTEX-1122O-1326-SM-5H11F 60-69 years, female 676.5
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 674.1
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 661.5
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 659.0
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 658.6
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 657.9
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 657.5
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 656.6
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 655.8
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 653.1
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 651.8
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 650.2
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 646.0
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 637.1
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 635.8
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 634.2
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 633.8
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 633.2
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 631.6
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 631.1
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 627.7
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 623.0
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 617.1
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 607.2
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 605.6
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 605.2
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 598.2
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 595.0
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 593.2
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 591.4
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 590.0
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 587.8
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 586.1
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 584.5
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 583.4
GTEX-117YX-0326-SM-5GICL 50-59 years, male 583.0
GTEX-ZTSS-0926-SM-59865 40-49 years, male 582.5
GTEX-13113-1226-SM-5EGHT 60-69 years, female 582.3
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 580.7
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 578.9
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 578.4
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 574.5
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 573.4
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 570.8
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 568.1
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 567.0
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 564.7
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 561.5
GTEX-14PKU-1626-SM-6871C 40-49 years, female 560.1
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 558.7
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 558.0
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 549.4
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 548.9
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 544.4
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 543.7
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 543.6
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 543.4
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 543.0
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 540.7
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 539.5
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 539.3
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 538.3
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 538.1
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 536.3
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 535.9
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 533.7
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 532.9
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 532.6
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 532.4
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 528.9
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 527.2
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 526.6
GTEX-183FY-1626-SM-793D8 20-29 years, male 523.6
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 521.2
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 521.0
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 518.1
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 517.6
GTEX-13O61-1326-SM-5KM31 60-69 years, male 515.5
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 512.2
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 511.8
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 511.0
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 510.5
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 510.0
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 508.0
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 504.4
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 502.5
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 500.6
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 499.9
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 497.7
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 497.2
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 495.8
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 494.1
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 494.0
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 492.1
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 490.4
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 489.9
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 489.4
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 485.2
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 484.3
GTEX-14PN3-2026-SM-68729 60-69 years, female 477.6
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 474.0
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 472.2
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 472.0
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 467.5
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 465.4
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 463.1
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 459.5
GTEX-144GM-1026-SM-79OKU 20-29 years, male 458.6
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 456.9
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 456.6
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 456.0
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 455.0
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 454.8
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 454.6
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 452.2
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 447.4
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 445.4
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 445.1
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 445.1
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 443.6
GTEX-1C475-1426-SM-793CH 40-49 years, female 443.4
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 440.5
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 439.7
GTEX-13111-1426-SM-5DUW3 50-59 years, male 436.7
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 436.5
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 436.2
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 434.4
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 432.7
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 431.7
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 430.8
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 427.5
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 418.0
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 417.9
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 410.4
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 409.3
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 408.2
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 404.4
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 402.1
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 398.5
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 389.0
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 383.2
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 382.0
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 380.4
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 374.6
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 370.3
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 333.3
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 281.7
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

396.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 396.3
FF:10024-101D6 15,40,85 years, mixed 396.3

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