MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:54.6 nTPM
HPA Brain:27.7 nTPM
GTEx:54.6 nTPM
FANTOM5:85.3 Scaled Tags Per Million
Pig:58.9 nTPM
Mouse:47.4 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 27.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.2
1870 Female, age 42, unknown 29.5
2019 Male, age 18, unknown 26.0
2411 Female, age 72, unknown 25.9
1833 Male, age 53, unknown 23.5
1830 Male, age 51, unknown 22.1
2219 Male, age 76, both hemispheres 20.5
2828 Female, age 72, unknown 20.1
1827 Male, age 72, unknown 19.5
2666 Male, age 74, left hemisphere 19.0
2586 Male, age 75, left hemisphere 16.0
Dorsal raphe nucleus
nTPM: 27.7
2298 Female, age 72, unknown 32.6
2750 Male, age 76, both hemispheres 30.5
2047 Male, age 72, unknown 27.6
1828 Male, age 53, unknown 25.2
2016 Female, age 72, unknown 22.7
Inferior colliculus
nTPM: 25.7
2097 Female, age 72, unknown 29.5
1848 Female, age 42, unknown 25.2
1890 Male, age 53, unknown 25.2
2849 Male, age 72, unknown 23.0
Median raphe nucleus
nTPM: 25.8
2220 Male, age 76, midline 25.8
Periaquaductal grey, anterior
nTPM: 22.3
2502 Female, age 75, unknown 25.0
1947 Male, age 18, unknown 22.5
1795 Male, age 51, unknown 19.5
Periaquaductal grey, dorsal
nTPM: 21.6
2850 Male, age 76, both hemispheres 24.5
1840 Male, age 53, unknown 21.6
2464 Female, age 72, unknown 21.5
1831 Male, age 72, unknown 18.6
Periaquaductal grey, lateral
nTPM: 23.5
2272 Male, age 74, both hemispheres 26.0
2140 Male, age 76, both hemispheres 22.3
2053 Male, age 18, unknown 22.2
Pretectal area
nTPM: 23.2
2273 Male, age 74, both hemispheres 26.9
2224 Female, age 72, unknown 26.2
1817 Female, age 42, unknown 25.5
2667 Female, age 75, unknown 24.5
2007 Male, age 72, unknown 24.2
2316 Male, age 76, right hemisphere 23.8
1815 Male, age 53, unknown 23.0
1816 Male, age 51, unknown 21.7
2825 Male, age 18, unknown 21.3
1944 Female, age 72, unknown 20.5
2407 Male, age 75, both hemispheres 17.1
Red nucleus
nTPM: 23.1
1821 Female, age 72, unknown 30.0
1865 Male, age 51, unknown 26.5
1904 Male, age 53, unknown 26.5
1954 Female, age 42, unknown 26.5
2769 Male, age 72, unknown 24.1
2785 Male, age 18, unknown 23.7
2227 Male, age 72, unknown 23.3
2503 Female, age 72, unknown 23.2
2823 Male, age 76, right hemisphere 22.9
2725 Female, age 75, unknown 18.2
2588 Male, age 74, left hemisphere 16.9
2584 Male, age 75, left hemisphere 15.5
Substantia nigra
nTPM: 24.0
2241 Male, age 72, unknown 28.9
1851 Male, age 51, unknown 28.7
1889 Female, age 72, unknown 27.2
1916 Female, age 42, unknown 27.2
1941 Male, age 53, unknown 23.4
2590 Female, age 75, unknown 23.2
2699 Male, age 18, unknown 23.1
2409 Female, age 72, unknown 21.7
2583 Male, age 75, right hemisphere 19.6
2665 Male, age 74, both hemispheres 16.6
Superior colliculus
nTPM: 22.4
2587 Male, age 74, left hemisphere 26.7
1895 Male, age 76, right hemisphere 26.2
1913 Female, age 42, unknown 24.5
2668 Female, age 75, unknown 23.6
1995 Male, age 72, unknown 22.8
1796 Male, age 53, unknown 21.6
1839 Male, age 51, unknown 20.7
2261 Male, age 18, unknown 20.5
2087 Female, age 72, unknown 20.3
2664 Male, age 75, both hemispheres 17.2
Ventral tegmental area
nTPM: 24.5
2218 Male, age 76, both hemispheres 26.0
2410 Female, age 72, unknown 25.8
2223 Female, age 72, unknown 25.7
1915 Female, age 42, unknown 25.1
2021 Male, age 53, unknown 22.4
1942 Male, age 51, unknown 22.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 54.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 54.6
Samples: 139

Max nTPM: 90.8
Min nTPM: 34.5
Std nTPM: 10.8
Median nTPM: 52.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 90.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 83.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 82.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 78.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 77.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 76.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 76.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 75.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 72.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 72.7
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 71.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 85.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 85.3
FF:10158-103A5 76 years, female 85.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 58.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 58.9
Samples: 4

Max nTPM: 79.4
Min nTPM: 50.2
Sample A Female 79.4
Sample B Female 52.4
Sample C Male 53.7
Sample D Male 50.2
Midbrain
nTPM: 58.1
Samples: 4

Max nTPM: 76.8
Min nTPM: 45.0
Sample A Female 76.8
Sample B Female 60.9
Sample C Male 45.0
Sample D Male 49.6
Periaqueductal gray
nTPM: 52.5
Samples: 3

Max nTPM: 55.0
Min nTPM: 48.7
Sample B Female 48.7
Sample C Male 53.9
Sample D Male 55.0
Superior colliculi
nTPM: 56.8
Samples: 4

Max nTPM: 68.8
Min nTPM: 51.3
Sample A Female 68.8
Sample B Female 54.4
Sample C Male 51.3
Sample D Male 52.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 47.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 47.5
Samples: 4

Max nTPM: 54.4
Min nTPM: 41.8
Sample A Male 54.4
Sample B Male 45.0
Sample C Female 41.8
Sample D Female 48.6

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