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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:400.3 nTPM
HPA Brain:158.4 nTPM
GTEx:400.3 nTPM
FANTOM5:518.5 Scaled Tags Per Million
Pig:76.9 nTPM
Mouse:221.7 nTPM
Allen mouse:6.1 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

158.4
Sample id Sample description nTPM
Amygdala
nTPM: 143.9
2514 Male, age 75, right hemisphere 184.5
1987 Female, age 91, left hemisphere 146.5
2814 Male, age 76, right hemisphere 138.5
2695 Female, age 67, right hemisphere 133.9
2517 Female, age 94, left hemisphere 116.3
Basal amygdala
nTPM: 121.6
2243 Female, age 91, right hemisphere 191.1
2609 Male, age 75, right hemisphere 142.0
1955 Male, age 76, both hemispheres 139.7
2685 Female, age 94, left hemisphere 92.6
2110 Male, age 80, left hemisphere 88.6
2827 Female, age 67, right hemisphere 75.4
Central amygdala
nTPM: 123.9
2701 Female, age 91, right hemisphere 157.8
1905 Male, age 76, both hemispheres 125.3
2515 Male, age 75, right hemisphere 124.1
2239 Male, age 80, left hemisphere 123.3
2826 Female, age 94, left hemisphere 89.0
Corticomedial amygdala
nTPM: 158.4
2240 Male, age 76, both hemispheres 218.8
2242 Female, age 91, right hemisphere 211.6
2429 Female, age 94, left hemisphere 150.0
2428 Male, age 75, right hemisphere 144.0
2535 Female, age 67, right hemisphere 138.3
2829 Male, age 80, left hemisphere 87.7
Lateral amygdala
nTPM: 100.8
2534 Female, age 94, left hemisphere 121.7
2516 Male, age 75, right hemisphere 114.4
1883 Male, age 76, both hemispheres 111.0
2255 Female, age 91, right hemisphere 110.2
2256 Male, age 80, left hemisphere 90.8
2830 Female, age 67, right hemisphere 56.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

400.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 400.3
Samples: 152

Max nTPM: 938.6
Min nTPM: 254.6
Std nTPM: 113.4
Median nTPM: 372.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 938.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 863.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 765.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 754.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 729.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 671.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 662.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 648.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 640.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 629.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 626.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 619.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 587.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 580.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 540.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 529.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 513.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 510.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 499.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 491.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 475.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 472.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 470.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 467.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 456.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 455.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 453.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 448.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 447.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 444.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 440.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 439.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 438.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 435.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 434.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 432.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 426.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 426.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 424.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 423.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 422.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 421.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 419.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 419.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 417.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 417.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 415.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 413.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 410.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 408.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 408.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 405.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 404.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 400.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 397.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 397.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 392.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 392.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 390.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 388.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 385.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 384.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 384.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 384.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 384.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 382.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 381.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 380.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 379.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 377.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 376.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 376.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 375.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 374.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 373.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 372.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 371.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 370.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 369.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 368.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 367.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 366.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 366.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 365.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 365.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 364.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 364.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 363.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 361.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 361.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 360.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 360.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 359.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 356.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 356.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 354.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 354.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 349.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 349.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 346.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 345.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 345.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 345.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 343.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 342.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 339.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 338.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 338.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 337.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 335.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 334.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 334.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 333.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 331.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 331.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 330.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 330.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 329.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 324.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 322.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 322.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 322.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 319.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 318.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 318.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 315.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 314.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 314.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 313.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 310.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 307.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 306.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 306.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 301.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 301.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 300.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 299.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 299.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 298.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 298.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 296.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 294.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 289.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 287.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 281.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 281.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 275.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 275.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 267.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 264.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 263.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 254.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

518.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 518.5
FF:10151-102I7 76 years, female 518.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

76.9
Pig sample Sample description nTPM
Amygdala
nTPM: 76.9
Samples: 4

Max nTPM: 97.5
Min nTPM: 64.0
Sample A Female 97.5
Sample B Female 78.1
Sample C Male 68.0
Sample D Male 64.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

221.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 221.7
Samples: 4

Max nTPM: 231.6
Min nTPM: 210.0
Sample A Male 226.7
Sample B Male 231.6
Sample C Female 218.3
Sample D Female 210.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

6.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 6.1
74750021 Antisense, RP_060220_05_E11, Mouse strain C57BL/6J (56 days, male) 6.3
70439183 Antisense, RP_050614_03_D02, Mouse strain C57BL/6J (56 days, male) 5.9

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