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TISSUE SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:209.6 nTPM
HPA:115.2 nTPM
GTEx:209.6 nTPM
FANTOM5:531.2 Scaled Tags Per Million

SMALL INTESTINE - Annotated protein expression
Pending normal tissue analysis

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

115.2
overview
Male, age 65
Small intestine sample 232
nTPM: 118.6
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 120.7
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 109.2
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 112.5

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

209.6
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 209.6
Samples: 187

Max nTPM: 385.2
Min nTPM: 134.7
Std nTPM: 43.9
Median nTPM: 199.7
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 385.2
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 371.4
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 369.4
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 361.6
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 353.5
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 329.9
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 312.9
GTEX-1192X-2526-SM-59868 50-59 years, male 312.0
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 298.2
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 287.9
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 275.7
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 273.8
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 269.7
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 269.7
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 269.1
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 268.9
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 268.9
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 267.5
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 266.9
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 266.7
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 265.4
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 262.7
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 260.5
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 259.1
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 257.3
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 253.6
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 250.5
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 250.0
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 249.9
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 247.1
GTEX-117YX-0326-SM-5GICL 50-59 years, male 245.4
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 243.1
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 242.5
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 241.2
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 240.4
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 240.1
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 238.0
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 237.3
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 237.1
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 236.3
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 235.4
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 235.2
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 234.9
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 231.6
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 231.3
GTEX-13111-1426-SM-5DUW3 50-59 years, male 231.2
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 230.1
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 229.7
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 227.8
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 227.6
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 224.1
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 223.9
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 223.2
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 222.5
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 221.7
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 220.9
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 219.8
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 218.9
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 218.6
GTEX-YFCO-1326-SM-664NV 40-49 years, male 218.5
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 217.4
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 217.1
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 215.8
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 215.1
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 213.9
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 212.8
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 212.7
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 211.9
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 210.7
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 210.6
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 210.4
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 209.9
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 208.8
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 208.5
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 208.2
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 207.0
GTEX-183FY-1626-SM-793D8 20-29 years, male 206.7
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 206.5
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 206.0
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 205.4
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 205.4
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 204.2
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 203.1
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 202.6
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 202.0
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 201.8
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 201.1
GTEX-14PK6-1626-SM-6871I 70-79 years, female 201.1
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 201.0
GTEX-1C475-1426-SM-793CH 40-49 years, female 200.9
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 200.8
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 200.4
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 200.1
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 199.7
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 199.1
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 197.9
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 197.8
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 197.1
GTEX-111YS-1426-SM-5GID8 60-69 years, male 197.0
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 195.3
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 195.2
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 195.1
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 194.8
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 194.6
GTEX-1122O-1326-SM-5H11F 60-69 years, female 194.4
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 194.1
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 194.1
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 194.0
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 194.0
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 194.0
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 193.3
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 193.2
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 193.2
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 193.1
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 192.8
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 192.6
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 192.1
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 191.7
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 191.4
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 190.4
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 189.3
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 189.2
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 189.2
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 189.0
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 189.0
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 187.9
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 187.8
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 186.0
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 185.7
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 185.5
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 185.5
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 184.8
GTEX-14PKU-1626-SM-6871C 40-49 years, female 184.6
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 184.0
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 183.9
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 183.8
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 182.7
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 182.6
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 182.6
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 181.8
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 181.0
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 180.6
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 180.2
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 179.5
GTEX-13113-1226-SM-5EGHT 60-69 years, female 179.4
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 179.3
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 178.4
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 177.2
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 176.9
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 175.7
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 174.6
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 174.1
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 173.2
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 173.1
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 173.0
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 172.9
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 172.2
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 171.4
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 170.9
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 169.5
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 169.2
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 168.4
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 167.6
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 166.5
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 165.9
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 165.8
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 165.1
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 165.0
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 163.3
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 163.0
GTEX-13O61-1326-SM-5KM31 60-69 years, male 162.6
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 162.6
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 161.7
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 161.4
GTEX-ZTSS-0926-SM-59865 40-49 years, male 161.3
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 161.2
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 160.2
GTEX-14PN3-2026-SM-68729 60-69 years, female 158.9
GTEX-144GM-1026-SM-79OKU 20-29 years, male 157.8
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 157.5
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 155.9
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 154.8
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 152.0
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 150.0
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 147.9
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 147.2
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 134.7
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

531.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 531.2
FF:10024-101D6 15,40,85 years, mixed 531.2

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