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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:74.0 nTPM
HPA Brain:89.5 nTPM
GTEx:74.0 nTPM
FANTOM5:89.6 Scaled Tags Per Million
Pig:32.6 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

89.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 78.4
1981 Female, age 72, midline 102.5
2048 Male, age 55, midline 85.6
2565 Male, age 75, midline 85.0
2816 Male, age 47, midline 61.4
2194 Female, age 79, both hemispheres 57.5
Cervical spinal cord, dorsal horn
nTPM: 78.1
2173 Female, age 72, unknown 113.9
2296 Male, age 66, both hemispheres 104.4
2069 Male, age 47, both hemispheres 79.7
1877 Male, age 55, unknown 67.1
2721 Male, age 90, both hemispheres 57.4
2297 Male, age 75, both hemispheres 45.9
Cervical spinal cord, ventral horn
nTPM: 89.5
2480 Male, age 75, both hemispheres 131.4
2809 Male, age 90, both hemispheres 111.7
2098 Female, age 72, unknown 103.5
2295 Male, age 66, both hemispheres 90.8
2820 Female, age 79, both hemispheres 51.5
2068 Male, age 55, unknown 48.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

74.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 74.0
Samples: 159

Max nTPM: 145.7
Min nTPM: 34.3
Std nTPM: 16.6
Median nTPM: 72.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 145.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 123.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 122.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 115.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 107.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 104.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 103.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 101.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 100.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 99.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 98.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 97.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 97.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 95.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 95.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 94.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 93.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 92.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 91.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 91.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 91.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 90.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 90.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 90.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 89.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 89.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 88.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 88.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 87.4
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 86.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 86.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 86.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 86.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 85.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 85.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 84.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 84.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 84.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 83.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 83.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 82.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 82.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 82.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 81.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 81.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 81.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 81.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 80.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 80.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 80.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 79.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 79.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 79.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 79.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 78.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 78.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 78.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 78.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 77.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 77.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 77.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 76.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 76.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 76.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 75.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 75.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 75.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 75.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 74.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 74.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 74.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 74.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 74.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 73.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 73.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 73.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 72.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 72.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 72.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 72.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 72.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 71.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 71.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 71.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 70.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 70.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 70.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 70.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 69.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 69.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 69.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 69.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 69.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 68.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 68.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 68.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 68.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 68.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 67.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 67.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 67.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 67.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 67.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 67.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 67.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 67.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 67.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 66.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 66.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 66.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 66.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 65.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 65.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 65.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 65.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 64.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 64.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 64.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 64.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 63.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 63.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 63.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 63.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 63.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 63.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 62.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 62.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 62.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 61.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 61.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 60.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 60.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 60.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 59.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 59.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 58.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 57.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 57.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 57.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 57.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 57.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 55.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 55.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 55.4
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 54.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 54.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 54.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 53.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 52.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 51.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 49.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 46.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 43.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 43.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 43.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 41.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 39.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 38.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 34.3
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

89.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 89.6
FF:10159-103A6 76 years, female 91.7
FF:10181-103D1 60 years, female 87.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

32.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 30.6
Samples: 4

Max nTPM: 37.1
Min nTPM: 27.1
Sample A Female 30.2
Sample B Female 37.1
Sample C Male 27.1
Sample D Male 28.0
Ventral spinal cord
nTPM: 32.6
Samples: 4

Max nTPM: 35.4
Min nTPM: 28.7
Sample A Female 32.4
Sample B Female 35.4
Sample C Male 28.7
Sample D Male 33.8

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