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COMMD4
HPA
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  • SUMMARY

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PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

COMMD4
Synonyms FLJ20452
Gene descriptioni

Full gene name according to HGNC.

COMM domain containing 4
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 15
Cytoband q24.2
Chromosome location (bp) 75336020 - 75343224
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

7
Ensembl ENSG00000140365 (version 109)
Entrez gene 54939
HGNC HGNC:26027
UniProt Q9H0A8 (UniProt - Evidence at protein level)
neXtProt NX_Q9H0A8
GeneCards COMMD4
Antibodypedia COMMD4 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

May modulate activity of cullin-RING E3 ubiquitin ligase (CRL) complexes 1. Down-regulates activation of NF-kappa-B.... show less
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Transcription, Transcription regulation, Ubl conjugation pathway
Gene summary (Entrez)i

Useful information about the gene from Entrez

Located in cytosol; intracellular membrane-bounded organelle; and plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
COMMD4-201
ENSP00000267935
ENST00000267935
Q9H0A8
[Direct mapping] COMM domain-containing protein 4
Show all
   MEMSAT3 predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0005886 [plasma membrane]
GO:0043231 [intracellular membrane-bounded organelle]
Show all
199 aa
21.8 kDa
No 0
COMMD4-202
ENSP00000340867
ENST00000338995
Q9H0A8
[Direct mapping] COMM domain-containing protein 4
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0005886 [plasma membrane]
GO:0043231 [intracellular membrane-bounded organelle]
Show all
140 aa
15.5 kDa
No 0
COMMD4-207
ENSP00000455750
ENST00000562789
H3BQF2
[Direct mapping] COMM domain-containing protein 4
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
146 aa
15.6 kDa
No 0
COMMD4-211
ENSP00000455249
ENST00000564815
A0A0B4J287
[Direct mapping] COMM domain-containing protein 4
Show all
   MEMSAT3 predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005829 [cytosol]
GO:0005886 [plasma membrane]
GO:0043231 [intracellular membrane-bounded organelle]
Show all
177 aa
19.4 kDa
No 0
COMMD4-217
ENSP00000457693
ENST00000567195
Q9H0A8
[Direct mapping] COMM domain-containing protein 4
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0005886 [plasma membrane]
GO:0043231 [intracellular membrane-bounded organelle]
Show all
113 aa
12.3 kDa
No 0
COMMD4-218
ENSP00000455303
ENST00000567377
H3BPG2
[Direct mapping] COMM domain-containing protein 4
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
136 aa
14.6 kDa
No 0
COMMD4-223
ENSP00000454283
ENST00000568301
H3BM91
[Direct mapping] COMM domain-containing protein 4
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005829 [cytosol]
GO:0005886 [plasma membrane]
GO:0043231 [intracellular membrane-bounded organelle]
Show all
211 aa
22.8 kDa
No 0

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