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TPM1
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  • TPM1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:71.2 nTPM
HPA Brain:67.5 nTPM
GTEx:71.2 nTPM
FANTOM5:151.5 Scaled Tags Per Million
Pig:56.1 nTPM
Mouse:209.9 nTPM
Allen mouse:17.7 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

67.5
Sample id Sample description nTPM
Amygdala
nTPM: 57.1
2695 Female, age 67, right hemisphere 64.8
2517 Female, age 94, left hemisphere 60.7
1987 Female, age 91, left hemisphere 57.2
2814 Male, age 76, right hemisphere 51.6
2514 Male, age 75, right hemisphere 51.3
Basal amygdala
nTPM: 65.2
2827 Female, age 67, right hemisphere 72.3
2110 Male, age 80, left hemisphere 71.3
2243 Female, age 91, right hemisphere 67.3
2609 Male, age 75, right hemisphere 62.7
1955 Male, age 76, both hemispheres 59.2
2685 Female, age 94, left hemisphere 58.2
Central amygdala
nTPM: 58.4
2826 Female, age 94, left hemisphere 65.8
2239 Male, age 80, left hemisphere 62.2
2515 Male, age 75, right hemisphere 60.1
1905 Male, age 76, both hemispheres 54.6
2701 Female, age 91, right hemisphere 49.3
Corticomedial amygdala
nTPM: 67.5
2829 Male, age 80, left hemisphere 77.1
2242 Female, age 91, right hemisphere 74.4
2535 Female, age 67, right hemisphere 72.3
2240 Male, age 76, both hemispheres 65.5
2428 Male, age 75, right hemisphere 57.8
2429 Female, age 94, left hemisphere 57.7
Lateral amygdala
nTPM: 61.5
2830 Female, age 67, right hemisphere 80.7
2534 Female, age 94, left hemisphere 61.5
2516 Male, age 75, right hemisphere 61.0
1883 Male, age 76, both hemispheres 56.8
2256 Male, age 80, left hemisphere 56.7
2255 Female, age 91, right hemisphere 52.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

71.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 71.2
Samples: 152

Max nTPM: 147.8
Min nTPM: 37.7
Std nTPM: 16.6
Median nTPM: 68.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 147.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 106.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 106.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 105.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 103.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 102.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 100.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 100.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 98.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 98.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 97.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 96.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 95.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 93.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 93.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 92.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 92.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 92.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 91.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 90.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 90.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 90.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 89.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 89.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 89.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 88.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 88.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 88.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 87.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 87.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 86.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 85.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 85.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 85.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 85.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 84.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 82.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 82.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 81.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 81.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 81.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 81.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 80.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 79.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 78.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 78.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 78.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 77.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 77.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 76.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 76.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 75.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 75.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 75.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 75.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 74.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 74.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 74.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 73.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 73.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 73.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 72.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 71.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 71.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 70.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 70.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 70.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 70.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 69.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 69.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 69.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 69.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 68.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 68.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 68.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 68.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 68.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 67.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 67.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 67.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 67.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 67.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 67.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 67.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 66.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 66.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 65.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 65.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 65.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 65.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 65.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 64.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 64.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 64.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 64.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 64.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 64.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 64.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 64.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 63.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 63.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 63.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 63.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 62.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 61.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 61.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 61.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 61.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 60.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 60.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 60.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 60.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 59.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 59.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 59.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 58.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 58.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 57.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 57.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 57.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 56.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 56.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 56.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 56.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 56.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 56.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 56.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 55.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 54.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 54.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 54.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 54.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 54.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 53.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 53.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 52.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 51.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 50.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 50.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 49.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 49.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 49.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 49.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 49.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 47.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 47.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 46.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 45.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 45.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 45.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 43.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 37.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

151.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 151.5
FF:10151-102I7 76 years, female 151.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

56.1
Pig sample Sample description nTPM
Amygdala
nTPM: 56.1
Samples: 4

Max nTPM: 73.6
Min nTPM: 45.7
Sample A Female 73.6
Sample B Female 49.1
Sample C Male 45.7
Sample D Male 55.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

209.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 209.9
Samples: 4

Max nTPM: 219.5
Min nTPM: 200.3
Sample A Male 200.3
Sample B Male 219.5
Sample C Female 206.1
Sample D Female 213.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

17.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 17.7
69817031 Antisense, RP_050510_02_D12, Mouse strain C57BL/6J (56 days, male) 17.7

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