MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.2 nTPM
HPA Brain:36.8 nTPM
GTEx:17.2 nTPM
FANTOM5:66.9 Scaled Tags Per Million
Pig:14.6 nTPM
Mouse:3.5 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 36.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.7
2828 Female, age 72, unknown 23.6
1870 Female, age 42, unknown 19.0
1827 Male, age 72, unknown 18.2
1830 Male, age 51, unknown 18.2
2586 Male, age 75, left hemisphere 18.1
2666 Male, age 74, left hemisphere 17.8
2019 Male, age 18, unknown 16.9
2411 Female, age 72, unknown 15.9
2219 Male, age 76, both hemispheres 15.0
1833 Male, age 53, unknown 14.4
Dorsal raphe nucleus
nTPM: 22.5
2016 Female, age 72, unknown 37.5
2298 Female, age 72, unknown 24.6
1828 Male, age 53, unknown 24.2
2750 Male, age 76, both hemispheres 13.6
2047 Male, age 72, unknown 12.7
Inferior colliculus
nTPM: 20.0
2849 Male, age 72, unknown 22.9
2097 Female, age 72, unknown 21.1
1848 Female, age 42, unknown 18.3
1890 Male, age 53, unknown 17.6
Median raphe nucleus
nTPM: 13.7
2220 Male, age 76, midline 13.7
Periaquaductal grey, anterior
nTPM: 25.0
1795 Male, age 51, unknown 30.9
2502 Female, age 75, unknown 27.5
1947 Male, age 18, unknown 16.5
Periaquaductal grey, dorsal
nTPM: 36.8
1831 Male, age 72, unknown 65.8
2850 Male, age 76, both hemispheres 39.3
1840 Male, age 53, unknown 24.0
2464 Female, age 72, unknown 17.9
Periaquaductal grey, lateral
nTPM: 36.5
2053 Male, age 18, unknown 44.9
2272 Male, age 74, both hemispheres 35.4
2140 Male, age 76, both hemispheres 29.2
Pretectal area
nTPM: 27.4
2273 Male, age 74, both hemispheres 73.2
2407 Male, age 75, both hemispheres 45.3
2316 Male, age 76, right hemisphere 38.9
2224 Female, age 72, unknown 28.0
1815 Male, age 53, unknown 24.9
2825 Male, age 18, unknown 21.5
2667 Female, age 75, unknown 16.0
1944 Female, age 72, unknown 14.5
1817 Female, age 42, unknown 14.2
1816 Male, age 51, unknown 13.8
2007 Male, age 72, unknown 10.6
Red nucleus
nTPM: 15.9
2725 Female, age 75, unknown 22.8
2785 Male, age 18, unknown 20.2
2503 Female, age 72, unknown 19.5
1865 Male, age 51, unknown 18.3
2584 Male, age 75, left hemisphere 17.3
1904 Male, age 53, unknown 17.0
1821 Female, age 72, unknown 13.6
2588 Male, age 74, left hemisphere 13.3
2227 Male, age 72, unknown 13.2
2769 Male, age 72, unknown 13.0
1954 Female, age 42, unknown 12.0
2823 Male, age 76, right hemisphere 10.3
Substantia nigra
nTPM: 20.0
2699 Male, age 18, unknown 32.8
2583 Male, age 75, right hemisphere 27.5
2590 Female, age 75, unknown 22.8
1851 Male, age 51, unknown 22.1
1941 Male, age 53, unknown 20.6
2409 Female, age 72, unknown 17.7
2665 Male, age 74, both hemispheres 16.5
1916 Female, age 42, unknown 13.6
2241 Male, age 72, unknown 13.5
1889 Female, age 72, unknown 12.9
Superior colliculus
nTPM: 35.5
1995 Male, age 72, unknown 81.3
1913 Female, age 42, unknown 73.7
2587 Male, age 74, left hemisphere 41.3
2664 Male, age 75, both hemispheres 32.9
2087 Female, age 72, unknown 26.6
1839 Male, age 51, unknown 25.5
1796 Male, age 53, unknown 23.3
2668 Female, age 75, unknown 21.7
2261 Male, age 18, unknown 17.4
1895 Male, age 76, right hemisphere 11.2
Ventral tegmental area
nTPM: 27.4
2021 Male, age 53, unknown 42.5
2223 Female, age 72, unknown 30.5
1942 Male, age 51, unknown 28.3
1915 Female, age 42, unknown 27.0
2218 Male, age 76, both hemispheres 18.6
2410 Female, age 72, unknown 17.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 17.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.2
Samples: 139

Max nTPM: 62.4
Min nTPM: 5.3
Std nTPM: 11.2
Median nTPM: 14.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 62.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 61.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 56.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 53.8
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 47.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 46.2
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 42.4
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 37.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 36.0
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 35.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 32.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 66.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 66.9
FF:10158-103A5 76 years, female 66.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 14.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 14.0
Samples: 4

Max nTPM: 26.9
Min nTPM: 8.3
Sample A Female 9.1
Sample B Female 26.9
Sample C Male 8.3
Sample D Male 11.7
Midbrain
nTPM: 8.2
Samples: 4

Max nTPM: 11.9
Min nTPM: 5.6
Sample A Female 11.9
Sample B Female 8.4
Sample C Male 7.0
Sample D Male 5.6
Periaqueductal gray
nTPM: 8.1
Samples: 3

Max nTPM: 8.9
Min nTPM: 7.5
Sample B Female 8.9
Sample C Male 7.5
Sample D Male 8.0
Superior colliculi
nTPM: 14.6
Samples: 4

Max nTPM: 28.5
Min nTPM: 7.5
Sample A Female 14.1
Sample B Female 28.5
Sample C Male 8.3
Sample D Male 7.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 3.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.5
Samples: 4

Max nTPM: 4.1
Min nTPM: 2.7
Sample A Male 4.1
Sample B Male 3.7
Sample C Female 3.6
Sample D Female 2.7

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