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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:106.3 nTPM
HPA Brain:103.1 nTPM
GTEx:106.3 nTPM
FANTOM5:659.7 Scaled Tags Per Million
Pig:127.4 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

103.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 86.3
2816 Male, age 47, midline 105.6
1981 Female, age 72, midline 96.2
2194 Female, age 79, both hemispheres 84.4
2048 Male, age 55, midline 80.9
2565 Male, age 75, midline 64.4
Cervical spinal cord, dorsal horn
nTPM: 95.5
2296 Male, age 66, both hemispheres 195.7
2173 Female, age 72, unknown 150.2
2069 Male, age 47, both hemispheres 84.4
1877 Male, age 55, unknown 72.0
2721 Male, age 90, both hemispheres 41.6
2297 Male, age 75, both hemispheres 28.9
Cervical spinal cord, ventral horn
nTPM: 103.1
2820 Female, age 79, both hemispheres 126.2
2068 Male, age 55, unknown 119.4
2098 Female, age 72, unknown 114.2
2480 Male, age 75, both hemispheres 96.1
2809 Male, age 90, both hemispheres 85.6
2295 Male, age 66, both hemispheres 77.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

106.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 106.3
Samples: 159

Max nTPM: 251.8
Min nTPM: 20.7
Std nTPM: 47.9
Median nTPM: 102.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 251.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 251.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 239.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 230.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 228.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 205.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 196.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 188.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 185.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 185.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 183.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 182.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 181.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 181.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 181.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 178.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 178.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 172.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 171.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 168.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 167.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 166.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 162.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 151.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 151.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 149.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 149.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 148.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 144.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 142.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 141.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 141.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 138.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 137.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 136.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 136.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 133.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 130.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 130.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 130.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 129.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 129.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 129.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 128.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 128.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 127.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 127.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 127.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 126.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 125.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 123.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 123.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 122.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 121.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 121.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 120.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 119.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 117.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 116.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 115.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 115.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 114.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 114.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 114.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 114.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 112.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 112.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 110.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 110.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 109.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 108.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 108.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 107.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 106.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 105.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 105.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 104.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 103.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 102.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 102.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 102.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 101.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 100.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 99.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 96.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 96.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 95.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 95.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 95.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 94.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 93.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 92.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 90.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 88.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 88.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 88.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 88.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 86.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 85.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 84.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 84.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 84.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 83.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 81.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 81.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 80.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 80.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 79.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 79.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 78.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 77.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 76.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 75.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 75.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 74.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 74.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 73.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 72.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 72.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 71.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 71.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 71.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 67.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 66.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 66.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 65.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 65.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 61.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 61.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 61.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 61.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 59.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 59.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 59.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 56.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 56.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 56.3
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 54.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 54.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 53.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 51.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 49.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 49.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 48.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 48.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 47.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 46.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 45.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 44.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 43.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 43.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 41.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 36.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 31.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 29.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 29.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 26.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 24.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 20.7
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

659.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 659.7
FF:10181-103D1 60 years, female 962.5
FF:10159-103A6 76 years, female 356.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

127.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 100.0
Samples: 4

Max nTPM: 111.9
Min nTPM: 87.7
Sample A Female 109.0
Sample B Female 91.5
Sample C Male 87.7
Sample D Male 111.9
Ventral spinal cord
nTPM: 127.4
Samples: 4

Max nTPM: 161.0
Min nTPM: 102.7
Sample A Female 142.1
Sample B Female 102.7
Sample C Male 103.7
Sample D Male 161.0

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