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PCSK6
HPA
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  • SUMMARY

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  • PCSK6
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

PCSK6
Synonyms PACE4, SPC4
Gene descriptioni

Full gene name according to HGNC.

Proprotein convertase subtilisin/kexin type 6
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Enzymes
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Secreted, Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 15
Cytoband q26.3
Chromosome location (bp) 101289784 - 101525202
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

16
Ensembl ENSG00000140479 (version 109)
Entrez gene 5046
HGNC HGNC:8569
UniProt P29122 (UniProt - Evidence at protein level)
neXtProt NX_P29122
GeneCards PCSK6
Antibodypedia PCSK6 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Serine endoprotease that processes various proproteins by cleavage at paired basic amino acids, recognizing the RXXX[KR]R consensus motif. Likely functions in the constitutive secretory pathway, with unique restricted distribution in both neuroendocrine and non-neuroendocrine tissues.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Hydrolase, Protease, Serine protease
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

Calcium
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a member of the subtilisin-like proprotein convertase family, which includes proteases that process protein and peptide precursors trafficking through regulated or constitutive branches of the secretory pathway. The encoded protein undergoes an initial autocatalytic processing event in the ER to generate a heterodimer which exits the ER and sorts to the trans-Golgi network where a second autocatalytic event takes place and the catalytic activity is acquired. The encoded protease is constitutively secreted into the extracellular matrix and expressed in many tissues, including neuroendocrine, liver, gut, and brain. This gene encodes one of the seven basic amino acid-specific members which cleave their substrates at single or paired basic residues. Some of its substrates include transforming growth factor beta related proteins, proalbumin, and von Willebrand factor. This gene is thought to play a role in tumor progression and left-right patterning. Alternatively spliced transcript variants encoding different isoforms have been identified. [provided by RefSeq, Feb 2014]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
PCSK6-201
ENSP00000332052
ENST00000331826
H7BXT3
[Direct mapping] Proprotein convertase subtilisin/kexin type 6
Show all
   MEMSAT3 predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
Predicted secreted proteins
   DeepTMHMM predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0004252 [serine-type endopeptidase activity]
GO:0006508 [proteolysis]
GO:0008233 [peptidase activity]
GO:0008236 [serine-type peptidase activity]
GO:0016787 [hydrolase activity]
Show all
664 aa
73 kDa
No 0
PCSK6-202
ENSP00000381246
ENST00000398185
H0Y3Q0
[Direct mapping] Proprotein convertase subtilisin/kexin type 6
Show all
   SPOCTOPUS predicted membrane proteins
Predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0004252 [serine-type endopeptidase activity]
GO:0006508 [proteolysis]
GO:0008233 [peptidase activity]
GO:0008236 [serine-type peptidase activity]
GO:0016787 [hydrolase activity]
Show all
797 aa
88.6 kDa
No 0
PCSK6-204
ENSP00000503625
ENST00000558154
A0A7I2V3T2
[Direct mapping] Proprotein convertase subtilisin/kexin type 6
Show all
   SPOCTOPUS predicted membrane proteins
Predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0004252 [serine-type endopeptidase activity]
GO:0006508 [proteolysis]
GO:0008233 [peptidase activity]
GO:0008236 [serine-type peptidase activity]
GO:0016787 [hydrolase activity]
Show all
256 aa
28.4 kDa
No 0
PCSK6-206
ENSP00000452839
ENST00000558864
H0YKK2
[Direct mapping] Proprotein convertase subtilisin/kexin type 6
Show all
Predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
77 aa
8.3 kDa
No 0
PCSK6-207
ENSP00000453771
ENST00000558951
H0YMW5
[Direct mapping] Proprotein convertase subtilisin/kexin type 6
Show all
Predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0004252 [serine-type endopeptidase activity]
GO:0006508 [proteolysis]
GO:0008233 [peptidase activity]
GO:0016787 [hydrolase activity]
Show all
125 aa
14.1 kDa
No 0
PCSK6-208
ENSP00000452997
ENST00000559417
H0YKZ4
[Direct mapping] Proprotein convertase subtilisin/kexin type 6
Show all
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
Predicted secreted proteins
   DeepTMHMM predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0004252 [serine-type endopeptidase activity]
GO:0006508 [proteolysis]
GO:0008233 [peptidase activity]
GO:0008236 [serine-type peptidase activity]
GO:0016787 [hydrolase activity]
Show all
616 aa
67.6 kDa
No 0
PCSK6-211
ENSP00000453155
ENST00000559605
H0YLC8
[Direct mapping] Proprotein convertase subtilisin/kexin type 6
Show all
Predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
126 aa
13.1 kDa
No 0
PCSK6-214
ENSP00000482760
ENST00000611716
P29122
[Direct mapping] Proprotein convertase subtilisin/kexin type 6
Show all
Enzymes
   Peptidases
   Serine-type peptidases
   SCAMPI predicted membrane proteins
Predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
   DeepTMHMM predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0004175 [endopeptidase activity]
GO:0004252 [serine-type endopeptidase activity]
GO:0005515 [protein binding]
GO:0005576 [extracellular region]
GO:0005615 [extracellular space]
GO:0005783 [endoplasmic reticulum]
GO:0005796 [Golgi lumen]
GO:0005886 [plasma membrane]
GO:0006508 [proteolysis]
GO:0007354 [zygotic determination of anterior/posterior axis, embryo]
GO:0007368 [determination of left/right symmetry]
GO:0008201 [heparin binding]
GO:0008233 [peptidase activity]
GO:0008236 [serine-type peptidase activity]
GO:0009100 [glycoprotein metabolic process]
GO:0009986 [cell surface]
GO:0012505 [endomembrane system]
GO:0016020 [membrane]
GO:0016485 [protein processing]
GO:0016486 [peptide hormone processing]
GO:0016787 [hydrolase activity]
GO:0030510 [regulation of BMP signaling pathway]
GO:0032902 [nerve growth factor production]
GO:0032940 [secretion by cell]
GO:0048406 [nerve growth factor binding]
GO:0051004 [regulation of lipoprotein lipase activity]
GO:0062023 [collagen-containing extracellular matrix]
Show all
969 aa
106.4 kDa
No 0
PCSK6-215
ENSP00000477768
ENST00000611967
P29122
[Direct mapping] Proprotein convertase subtilisin/kexin type 6
Show all
Enzymes
   Peptidases
   Serine-type peptidases
   MEMSAT3 predicted membrane proteins
   SCAMPI predicted membrane proteins
Predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
   DeepTMHMM predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0004175 [endopeptidase activity]
GO:0004252 [serine-type endopeptidase activity]
GO:0005515 [protein binding]
GO:0005576 [extracellular region]
GO:0005615 [extracellular space]
GO:0005783 [endoplasmic reticulum]
GO:0005796 [Golgi lumen]
GO:0005886 [plasma membrane]
GO:0006508 [proteolysis]
GO:0008201 [heparin binding]
GO:0008233 [peptidase activity]
GO:0008236 [serine-type peptidase activity]
GO:0009100 [glycoprotein metabolic process]
GO:0009986 [cell surface]
GO:0012505 [endomembrane system]
GO:0016020 [membrane]
GO:0016485 [protein processing]
GO:0016486 [peptide hormone processing]
GO:0016787 [hydrolase activity]
GO:0030510 [regulation of BMP signaling pathway]
GO:0032902 [nerve growth factor production]
GO:0032940 [secretion by cell]
GO:0048406 [nerve growth factor binding]
GO:0051004 [regulation of lipoprotein lipase activity]
GO:0062023 [collagen-containing extracellular matrix]
Show all
652 aa
71.8 kDa
No 0
PCSK6-216
ENSP00000478081
ENST00000615296
P29122
[Direct mapping] Proprotein convertase subtilisin/kexin type 6
Show all
Enzymes
   Peptidases
   Serine-type peptidases
   MEMSAT3 predicted membrane proteins
   SCAMPI predicted membrane proteins
Predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
   DeepTMHMM predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0004175 [endopeptidase activity]
GO:0004252 [serine-type endopeptidase activity]
GO:0005515 [protein binding]
GO:0005576 [extracellular region]
GO:0005615 [extracellular space]
GO:0005783 [endoplasmic reticulum]
GO:0005796 [Golgi lumen]
GO:0005886 [plasma membrane]
GO:0006508 [proteolysis]
GO:0008201 [heparin binding]
GO:0008233 [peptidase activity]
GO:0008236 [serine-type peptidase activity]
GO:0009100 [glycoprotein metabolic process]
GO:0009986 [cell surface]
GO:0012505 [endomembrane system]
GO:0016020 [membrane]
GO:0016485 [protein processing]
GO:0016486 [peptide hormone processing]
GO:0016787 [hydrolase activity]
GO:0030510 [regulation of BMP signaling pathway]
GO:0032902 [nerve growth factor production]
GO:0032940 [secretion by cell]
GO:0048406 [nerve growth factor binding]
GO:0051004 [regulation of lipoprotein lipase activity]
GO:0062023 [collagen-containing extracellular matrix]
Show all
623 aa
68.2 kDa
No 0
PCSK6-217
ENSP00000479496
ENST00000618548
P29122
[Direct mapping] Proprotein convertase subtilisin/kexin type 6
Show all
Enzymes
   Peptidases
   Serine-type peptidases
   SCAMPI predicted membrane proteins
Predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
   DeepTMHMM predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0004175 [endopeptidase activity]
GO:0004252 [serine-type endopeptidase activity]
GO:0005515 [protein binding]
GO:0005576 [extracellular region]
GO:0005615 [extracellular space]
GO:0005783 [endoplasmic reticulum]
GO:0005796 [Golgi lumen]
GO:0005886 [plasma membrane]
GO:0006508 [proteolysis]
GO:0008201 [heparin binding]
GO:0008233 [peptidase activity]
GO:0008236 [serine-type peptidase activity]
GO:0009100 [glycoprotein metabolic process]
GO:0009986 [cell surface]
GO:0012505 [endomembrane system]
GO:0016020 [membrane]
GO:0016485 [protein processing]
GO:0016486 [peptide hormone processing]
GO:0016787 [hydrolase activity]
GO:0030510 [regulation of BMP signaling pathway]
GO:0032902 [nerve growth factor production]
GO:0032940 [secretion by cell]
GO:0048406 [nerve growth factor binding]
GO:0051004 [regulation of lipoprotein lipase activity]
GO:0062023 [collagen-containing extracellular matrix]
Show all
956 aa
105.1 kDa
No 0
PCSK6-218
ENSP00000482831
ENST00000619160
A0A087WZR0
[Direct mapping] Proprotein convertase subtilisin/kexin type 6
Show all
   SCAMPI predicted membrane proteins
Predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
   DeepTMHMM predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0004252 [serine-type endopeptidase activity]
GO:0006508 [proteolysis]
GO:0008233 [peptidase activity]
GO:0008236 [serine-type peptidase activity]
GO:0016787 [hydrolase activity]
Show all
962 aa
105.3 kDa
No 0
PCSK6-219
ENSP00000481556
ENST00000622483
A0A087WY68
[Direct mapping] Proprotein convertase subtilisin/kexin type 6
Show all
   SCAMPI predicted membrane proteins
Predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
   DeepTMHMM predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0004252 [serine-type endopeptidase activity]
GO:0006508 [proteolysis]
GO:0008233 [peptidase activity]
GO:0008236 [serine-type peptidase activity]
GO:0016787 [hydrolase activity]
Show all
975 aa
106.6 kDa
No 0
PCSK6-220
ENSP00000487813
ENST00000632686
A0A0J9YW51
[Direct mapping] Proprotein convertase subtilisin/kexin type 6
Show all
Predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
308 aa
33.9 kDa
No 0
PCSK6-223
ENSP00000503544
ENST00000677364
A0A7I2V3M4
[Direct mapping] Proprotein convertase subtilisin/kexin type 6
Show all
   SPOCTOPUS predicted membrane proteins
Predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0004252 [serine-type endopeptidase activity]
GO:0006508 [proteolysis]
GO:0008233 [peptidase activity]
GO:0008236 [serine-type peptidase activity]
GO:0016787 [hydrolase activity]
Show all
538 aa
58.9 kDa
No 0
PCSK6-228
ENSP00000503170
ENST00000678918
A0A7I2V2Z7
[Direct mapping] Proprotein convertase subtilisin/kexin type 6
Show all
Predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0004252 [serine-type endopeptidase activity]
GO:0006508 [proteolysis]
GO:0008236 [serine-type peptidase activity]
GO:0016787 [hydrolase activity]
Show all
260 aa
29.5 kDa
No 0

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