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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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Brain proteome
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:225.4 nTPM
GTEx:225.4 nTPM
FANTOM5:243.7 Scaled Tags Per Million
Pig:99.3 nTPM
Mouse:401.4 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

225.4
GTEx sample id Sample description nTPM
Retina
Average nTPM: 225.4
Samples: 105

Max nTPM: 555.4
Min nTPM: 55.0
Std nTPM: 107.4
Median nTPM:
352_1 62 years, male 555.4
172_1 72 years, female 525.3
218_1 71 years, female 473.8
349_1 83 years, male 438.4
243_1 75 years, male 417.9
355_1 70 years, female 417.6
354_1 81 years, female 403.5
321_1 62 years, female 398.6
319_1 81 years, male 391.9
356_1 87 years, female 382.2
237_1 82 years, male 377.9
350_1 84 years, female 363.4
353_1 82 years, female 363.4
386_1 76 years, male 361.7
335_1 73 years, female 359.1
286_1 68 years, female 356.8
375_1 74 years, female 343.7
163_1 78 years, male 341.1
394_1 75 years, female 340.2
177_1 74 years, male 325.0
347_1 72 years, male 314.2
447_1 81 years, male 309.8
389_1 86 years, female 307.9
376_1 75 years, female 300.6
425_1 59 years, female 295.4
229_1 69 years, female 294.0
379_1 60 years, male 290.5
292_1 71 years, male 287.5
526_1 61 years, male 278.1
503_1 68 years, male 277.3
318_1 68 years, male 276.6
377_1 82 years, female 273.6
351_1 91 years, male 269.5
291_1 76 years, male 267.1
266_1 85 years, male 257.0
480_1 63 years, male 257.0
404_1 82 years, female 254.7
316_1 62 years, male 253.6
406_1 79 years, male 250.5
320_1 89 years, female 249.1
6_1 73 years, female 244.4
99_1 64 years, male 243.2
115_1 83 years, male 238.9
506_1 65 years, male 232.4
468_1 89 years, male 226.8
251_1 78 years, male 226.5
517_1 88 years, male 225.9
293_1 68 years, female 222.1
396_1 62 years, male 222.0
189_1 76 years, male 221.9
153_1 70 years, female 218.1
217_1 76 years, male 217.1
384_1 83 years, male 215.6
405_1 91 years, male 211.7
499_1 55 years, female 211.1
265_1 87 years, male 203.7
246_1 77 years, male 198.8
317_1 60 years, male 197.8
9_1 66 years, female 197.4
295_1 61 years, female 196.8
348_1 84 years, male 192.4
313_1 79 years, female 187.8
324_1 76 years, male 186.5
173_1 67 years, male 181.8
311_1 78 years, male 177.7
264_1 73 years, female 176.1
42_1 85 years, male 168.6
35_1 74 years, female 168.2
452_1 88 years, female 166.2
142_1 61 years, female 161.1
415_1 77 years, female 160.2
126_1 63 years, male 152.5
145_1 84 years, male 151.0
117_1 61 years, male 149.3
254_1 77 years, female 148.9
18_1 88 years, male 145.4
109_1 81 years, female 145.0
32_1 67 years, male 142.4
322_1 76 years, male 141.7
137_1 83 years, male 138.1
466_1 57 years, female 137.8
81_1 67 years, male 137.0
518_1 75 years, female 135.7
414_1 84 years, female 134.7
315_1 62 years, female 131.8
314_1 67 years, male 130.1
120_1 70 years, female 126.9
41_1 94 years, female 121.3
162_1 79 years, female 117.2
43_1 64 years, female 112.4
490_1 67 years, female 108.0
307_1 66 years, female 105.6
288_1 66 years, female 103.4
119_1 70 years, female 100.6
4_1 88 years, female 99.2
17_1 71 years, male 97.4
413_1 59 years, female 89.5
149_1 88 years, male 89.1
139_1 64 years, female 79.4
2_1 77 years, female 79.2
89_1 63 years, male 73.6
491_1 89 years, female 67.3
495_1 57 years, female 64.9
501_1 88 years, male 55.7
308_1 70 years, female 55.0
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

243.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 243.7
FF:10030-101E3 24-65 years, mixed 243.7

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

99.3
Pig sample Sample description nTPM
Retina
nTPM: 99.3
Samples: 4

Max nTPM: 102.3
Min nTPM: 95.8
Sample A Female 97.8
Sample B Female 102.3
Sample C Male 101.1
Sample D Male 95.8

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

401.4
Mouse sample Sample description nTPM
Retina
nTPM: 401.4
Samples: 4

Max nTPM: 510.2
Min nTPM: 306.0
Sample A Male 418.2
Sample B Male 371.3
Sample C Female 510.2
Sample D Female 306.0

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