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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:216.1 nTPM
GTEx:216.1 nTPM
FANTOM5:309.2 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA002807Antibody CAB002753
Squamous epithelial cells Not detectedMedium




VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

216.1
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 216.1
Samples: 156

Max nTPM: 551.6
Min nTPM: 55.1
Std nTPM: 114.9
Median nTPM: 189.5
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 551.6
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 545.8
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 516.7
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 509.6
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 507.3
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 501.5
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 496.5
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 494.9
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 490.8
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 456.5
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 446.8
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 445.0
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 425.7
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 403.5
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 384.2
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 380.3
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 379.7
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 377.7
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 374.6
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 361.5
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 358.3
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 357.4
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 350.4
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 329.4
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 326.6
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 312.8
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 307.0
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 302.7
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 300.5
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 293.5
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 293.3
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 292.2
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 290.4
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 289.7
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 286.1
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 284.8
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 272.5
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 270.3
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 267.8
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 265.7
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 265.6
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 265.0
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 264.0
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 261.9
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 259.3
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 258.1
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 256.3
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 254.5
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 249.8
GTEX-1C475-0526-SM-793AC 40-49 years, female 249.2
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 241.5
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 241.0
GTEX-16NPV-2526-SM-6M483 50-59 years, female 234.8
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 232.6
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 228.3
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 228.3
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 227.0
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 219.3
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 218.3
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 216.8
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 213.8
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 213.2
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 212.3
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 208.3
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 206.5
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 204.3
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 202.5
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 202.2
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 202.2
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 199.5
GTEX-QCQG-1226-SM-48U23 50-59 years, female 199.0
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 198.6
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 198.3
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 194.1
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 192.7
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 192.6
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 191.6
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 189.5
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 189.4
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 186.8
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 186.2
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 185.8
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 183.5
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 183.1
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 182.8
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 180.9
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 179.9
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 179.8
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 178.2
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 176.5
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 169.5
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 168.4
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 166.7
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 165.8
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 161.7
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 159.8
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 157.1
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 154.2
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 154.0
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 149.9
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 149.3
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 149.0
GTEX-14PKU-1326-SM-6871B 40-49 years, female 147.9
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 145.4
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 145.3
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 145.1
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 145.0
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 143.1
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 141.0
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 140.1
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 138.2
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 137.7
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 137.6
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 136.8
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 134.2
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 133.5
GTEX-S341-1226-SM-4AD5S 40-49 years, female 132.3
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 130.2
GTEX-11I78-2026-SM-5987C 50-59 years, female 126.5
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 126.0
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 125.1
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 124.9
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 124.0
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 119.0
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 118.9
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 118.7
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 117.6
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 116.3
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 115.9
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 109.9
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 109.7
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 109.3
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 108.3
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 106.4
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 106.1
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 103.2
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 103.1
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 101.9
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 100.7
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 99.8
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 99.0
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 98.1
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 96.4
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 94.8
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 93.7
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 93.0
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 85.4
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 83.7
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 80.7
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 76.7
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 72.8
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 72.2
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 70.7
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 61.8
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 61.4
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 55.1
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

309.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 309.2
FF:10204-103F6 68 years, female 309.2

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