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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:138.0 nTPM
GTEx:138.0 nTPM
FANTOM5:159.6 Scaled Tags Per Million
Pig:49.0 nTPM
Mouse:279.9 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

138.0
GTEx sample id Sample description nTPM
Retina
Average nTPM: 138.0
Samples: 105

Max nTPM: 204.2
Min nTPM: 95.2
Std nTPM: 21.7
Median nTPM:
490_1 67 years, female 204.2
162_1 79 years, female 190.2
32_1 67 years, male 179.7
491_1 89 years, female 176.8
81_1 67 years, male 176.4
321_1 62 years, female 176.4
414_1 84 years, female 174.1
229_1 69 years, female 173.1
347_1 72 years, male 172.5
468_1 89 years, male 171.2
126_1 63 years, male 170.6
217_1 76 years, male 169.9
153_1 70 years, female 165.5
447_1 81 years, male 165.4
117_1 61 years, male 163.7
149_1 88 years, male 163.5
35_1 74 years, female 162.9
415_1 77 years, female 162.6
413_1 59 years, female 161.7
18_1 88 years, male 161.6
495_1 57 years, female 158.7
43_1 64 years, female 158.6
145_1 84 years, male 156.5
142_1 61 years, female 156.4
6_1 73 years, female 155.2
139_1 64 years, female 154.1
466_1 57 years, female 153.7
115_1 83 years, male 152.7
324_1 76 years, male 150.3
9_1 66 years, female 147.4
246_1 77 years, male 147.1
425_1 59 years, female 145.6
404_1 82 years, female 145.5
237_1 82 years, male 144.0
120_1 70 years, female 143.3
2_1 77 years, female 142.8
307_1 66 years, female 142.8
499_1 55 years, female 142.7
315_1 62 years, female 142.1
89_1 63 years, male 141.6
348_1 84 years, male 141.3
389_1 86 years, female 140.9
17_1 71 years, male 140.8
313_1 79 years, female 139.3
172_1 72 years, female 138.3
375_1 74 years, female 137.7
384_1 83 years, male 137.7
254_1 77 years, female 137.6
243_1 75 years, male 136.3
518_1 75 years, female 136.2
349_1 83 years, male 136.0
265_1 87 years, male 135.6
396_1 62 years, male 134.8
352_1 62 years, male 134.5
376_1 75 years, female 134.4
335_1 73 years, female 133.6
266_1 85 years, male 133.4
41_1 94 years, female 133.0
386_1 76 years, male 132.5
316_1 62 years, male 131.6
406_1 79 years, male 130.9
379_1 60 years, male 130.8
354_1 81 years, female 129.8
526_1 61 years, male 129.6
137_1 83 years, male 129.3
405_1 91 years, male 129.0
109_1 81 years, female 127.6
355_1 70 years, female 127.5
322_1 76 years, male 127.3
119_1 70 years, female 127.2
4_1 88 years, female 127.1
480_1 63 years, male 127.1
503_1 68 years, male 127.1
189_1 76 years, male 125.7
173_1 67 years, male 125.3
42_1 85 years, male 124.9
292_1 71 years, male 123.6
286_1 68 years, female 123.4
314_1 67 years, male 122.9
177_1 74 years, male 122.7
501_1 88 years, male 122.3
377_1 82 years, female 119.2
517_1 88 years, male 119.2
288_1 66 years, female 118.9
506_1 65 years, male 118.9
99_1 64 years, male 118.2
293_1 68 years, female 117.9
319_1 81 years, male 116.9
291_1 76 years, male 116.5
350_1 84 years, female 116.4
311_1 78 years, male 116.3
251_1 78 years, male 114.3
353_1 82 years, female 113.7
394_1 75 years, female 113.3
317_1 60 years, male 112.1
320_1 89 years, female 109.8
308_1 70 years, female 109.1
318_1 68 years, male 108.4
163_1 78 years, male 107.9
218_1 71 years, female 107.0
264_1 73 years, female 106.7
452_1 88 years, female 102.1
295_1 61 years, female 101.8
351_1 91 years, male 95.8
356_1 87 years, female 95.2
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

159.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 159.6
FF:10030-101E3 24-65 years, mixed 159.6

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

49.0
Pig sample Sample description nTPM
Retina
nTPM: 49.0
Samples: 4

Max nTPM: 53.5
Min nTPM: 47.4
Sample A Female 47.4
Sample B Female 53.5
Sample C Male 47.8
Sample D Male 47.4

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

279.9
Mouse sample Sample description nTPM
Retina
nTPM: 280.0
Samples: 4

Max nTPM: 310.7
Min nTPM: 265.5
Sample A Male 310.7
Sample B Male 265.5
Sample C Female 267.5
Sample D Female 276.1

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