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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
295.0
nTPM
FANTOM5:
25.1
Scaled Tags Per Million
Pig:
19.3
nTPM
Allen mouse:
1.8
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
295.0
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 272.8
2188
Female, age 91, both hemispheres
290.3
2090
Male, age 80, both hemispheres
279.9
2301
Female, age 85, both hemispheres
276.7
1984
Male, age 76, both hemispheres
244.2
Dorsal cochlear nucleus nTPM: 250.3
2370
Male, age 61, both hemispheres
263.1
2187
Female, age 91, both hemispheres
254.8
2378
Male, age 80, both hemispheres
253.5
2058
Male, age 76, both hemispheres
241.4
2802
Male, age 74, right hemisphere
238.7
Dorsal tegmental nucleus nTPM: 234.4
1936
Male, age 76, left hemisphere
253.0
2358
Male, age 61, both hemispheres
242.3
2326
Male, age 74, both hemispheres
235.8
2083
Male, age 80, both hemispheres
206.5
Dorsolateral tegmental area nTPM: 244.9
2337
Male, age 61, both hemispheres
285.0
2141
Male, age 76, both hemispheres
259.7
2751
Female, age 85, both hemispheres
235.3
2360
Male, age 74, both hemispheres
232.2
2654
Male, age 80, both hemispheres
212.2
Kolliker-Fuse nucleus nTPM: 256.1
2793
Female, age 91, left hemisphere
310.4
2163
Male, age 80, both hemispheres
258.8
2315
Male, age 76, right hemisphere
199.1
Lateral lemniscal nuclei nTPM: 280.2
2320
Female, age 91, left hemisphere
327.5
2036
Male, age 80, both hemispheres
276.3
2746
Female, age 85, left hemisphere
273.6
2453
Male, age 74, right hemisphere
272.1
2169
Male, age 76, both hemispheres
251.6
Lateral parabrachial nucleus nTPM: 279.3
2790
Male, age 61, both hemispheres
335.4
2792
Male, age 76, both hemispheres
293.9
2013
Male, age 80, both hemispheres
253.5
2139
Female, age 85, right hemisphere
234.1
Lateral vestibular nucleus nTPM: 251.8
2184
Male, age 76, both hemispheres
254.5
2311
Male, age 80, both hemispheres
249.2
Locus coeruleus nTPM: 233.4
2788
Male, age 74, unknown
300.0
2720
Male, age 74, both hemispheres
254.6
2162
Male, age 80, both hemispheres
238.5
2014
Male, age 55, unknown
223.1
2317
Female, age 72, unknown
215.0
1980
Male, age 76, both hemispheres
213.0
2123
Female, age 91, both hemispheres
189.7
Medial parabrachial nucleus nTPM: 250.9
2854
Male, age 80, both hemispheres
291.0
2156
Male, age 61, both hemispheres
276.0
2786
Male, age 76, both hemispheres
258.4
2170
Female, age 91, both hemispheres
222.6
2463
Female, age 85, right hemisphere
206.8
Medial periolivary nuclei nTPM: 286.4
2458
Female, age 91, both hemispheres
336.4
2171
Female, age 85, both hemispheres
299.9
2081
Male, age 80, both hemispheres
294.9
2791
Male, age 74, right hemisphere
278.7
2063
Male, age 76, both hemispheres
221.9
Motor facial nucleus nTPM: 290.1
2327
Male, age 80, both hemispheres
361.3
2697
Female, age 85, both hemispheres
333.5
2795
Female, age 91, both hemispheres
295.7
2126
Male, age 61, both hemispheres
265.8
2365
Male, age 74, right hemisphere
265.6
2062
Male, age 76, both hemispheres
218.7
Motor trigeminal nucleus nTPM: 277.7
2321
Female, age 91, both hemispheres
299.6
2079
Male, age 80, both hemispheres
295.5
2309
Male, age 76, both hemispheres
286.8
2335
Male, age 61, both hemispheres
262.5
2560
Male, age 74, both hemispheres
244.0
Nuclei of the trapezoid body nTPM: 277.7
2368
Female, age 91, both hemispheres
309.4
2166
Male, age 80, both hemispheres
304.1
2735
Female, age 85, both hemispheres
294.9
2159
Male, age 61, both hemispheres
271.1
1983
Male, age 76, both hemispheres
209.2
Nucleus raphe magnus nTPM: 284.3
2459
Female, age 91, both hemispheres
333.9
2172
Female, age 85, both hemispheres
309.9
2328
Male, age 80, both hemispheres
295.2
2455
Male, age 74, both hemispheres
256.3
2160
Male, age 61, both hemispheres
255.3
2051
Male, age 76, both hemispheres
254.9
Paramedian reticular nucleus nTPM: 257.6
2052
Male, age 76, both hemispheres
321.2
2313
Male, age 61, both hemispheres
255.0
2050
Female, age 85, both hemispheres
244.9
2057
Male, age 80, both hemispheres
209.4
Pedunculopontine tegmental nucleus nTPM: 255.0
2338
Male, age 61, both hemispheres
282.3
1921
Female, age 85, both hemispheres
244.5
2334
Male, age 80, both hemispheres
238.3
Pontine nuclei nTPM: 256.1
2454
Male, age 74, left hemisphere
300.7
2319
Female, age 91, both hemispheres
295.6
2115
Male, age 80, left hemisphere
285.9
2109
Female, age 72, unknown
251.5
2727
Male, age 61, right hemisphere
247.7
1968
Male, age 76, left hemisphere
233.6
2787
Female, age 85, both hemispheres
219.8
1863
Male, age 55, unknown
213.8
Pontine raphe nucleus nTPM: 248.0
2853
Male, age 76, midline
256.4
2122
Female, age 85, midline
239.5
Posteroventral cochlear nucleus nTPM: 266.0
2371
Male, age 61, both hemispheres
291.1
2135
Female, age 91, both hemispheres
287.3
2341
Male, age 80, both hemispheres
275.1
2070
Male, age 76, both hemispheres
240.2
2752
Female, age 85, both hemispheres
236.1
Principal sensory trigeminal nucleus nTPM: 285.2
2008
Male, age 80, left hemisphere
304.3
2367
Female, age 91, left hemisphere
304.2
2158
Male, age 61, both hemispheres
270.8
2324
Male, age 76, both hemispheres
261.4
Reticular pontine nucleus, caudal nTPM: 263.8
2332
Male, age 80, right hemisphere
285.2
2559
Male, age 74, both hemispheres
264.0
2457
Female, age 91, both hemispheres
261.9
2092
Male, age 76, both hemispheres
244.0
Reticular pontine nucleus, oral nTPM: 254.1
2366
Female, age 91, both hemispheres
281.6
2167
Male, age 76, both hemispheres
257.3
2012
Female, age 85, both hemispheres
255.0
2361
Male, age 74, both hemispheres
240.9
1939
Male, age 80, both hemispheres
235.9
Reticulotegmental nucleus nTPM: 262.9
2333
Male, age 80, both hemispheres
274.8
2322
Female, age 91, both hemispheres
265.8
2325
Male, age 76, both hemispheres
261.6
2452
Male, age 74, both hemispheres
249.3
Spinal trigeminal nucleus, oral nTPM: 248.7
1978
Male, age 76, both hemispheres
251.6
2164
Male, age 80, both hemispheres
249.5
2737
Female, age 85, both hemispheres
245.0
Subcoeruleus area nTPM: 265.6
2089
Male, age 76, left hemisphere
320.1
1958
Male, age 80, both hemispheres
274.8
2369
Female, age 85, left hemisphere
251.0
2323
Female, age 91, left hemisphere
250.8
2451
Male, age 74, both hemispheres
231.0
Superior olive nTPM: 269.5
2329
Male, age 80, right hemisphere
327.3
2561
Female, age 91, both hemispheres
303.7
1875
Female, age 85, both hemispheres
252.7
2020
Male, age 76, both hemispheres
234.8
2364
Male, age 74, right hemisphere
228.8
Ventral periolivary nuclei nTPM: 295.0
2794
Female, age 91, left hemisphere
366.3
2130
Female, age 85, both hemispheres
295.7
2165
Male, age 80, both hemispheres
276.0
2023
Male, age 76, both hemispheres
241.8
Ventrolateral tegmental area, A5 NE cell group nTPM: 280.6
2456
Female, age 91, both hemispheres
306.2
2840
Female, age 85, both hemispheres
290.9
2161
Male, age 80, both hemispheres
282.3
2359
Male, age 61, both hemispheres
271.8
1959
Male, age 76, both hemispheres
268.4
2449
Male, age 74, both hemispheres
263.9
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
19.3
Pig sample
Sample description
nTPM
Pons nTPM: 19.3
Samples: 4
Max nTPM: 22.3
Min nTPM: 17.0
Sample A
Female
18.6
Sample B
Female
17.0
Sample C
Male
19.3
Sample D
Male
22.3
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
