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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:216.9 nTPM
FANTOM5:245.6 Scaled Tags Per Million
Pig:293.2 nTPM
Mouse:286.3 nTPM
Allen mouse:12.9 Expression energy

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

216.9
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 209.2
2396 Male, age 61, right hemisphere 241.4
2032 Female, age 42, unknown 215.3
2497 Male, age 66, unknown 170.9
Centromedial thalamic nucleus
nTPM: 169.0
2401 Male, age 76, right hemisphere 243.0
2279 Female, age 85, left hemisphere 94.9
Habenula
nTPM: 211.3
1957 Male, age 80, both hemispheres 256.9
2203 Male, age 61, left hemisphere 240.4
2252 Male, age 62, unknown 174.5
2276 Male, age 66, unknown 173.4
Lateral geniculate body
nTPM: 216.9
2106 Female, age 67, right hemisphere 307.5
1953 Male, age 62, unknown 242.7
2035 Female, age 72, unknown 228.8
2575 Female, age 94, right hemisphere 224.0
2399 Male, age 61, left hemisphere 218.8
2841 Male, age 80, both hemispheres 178.6
2857 Male, age 74, right hemisphere 173.0
2659 Male, age 66, unknown 161.4
Lateral thalamic nuclei
nTPM: 184.3
2765 Female, age 67, both hemispheres 240.2
2573 Female, age 94, left hemisphere 200.9
1903 Male, age 76, left hemisphere 189.3
2577 Male, age 74, both hemispheres 158.4
2661 Female, age 72, unknown 132.7
Medial dorsal thalamic nucleus
nTPM: 197.6
1971 Male, age 61, right hemisphere 249.0
2572 Female, age 94, right hemisphere 240.7
2498 Male, age 66, unknown 230.8
1859 Male, age 76, both hemispheres 222.7
2026 Male, age 62, unknown 207.5
1810 Male, age 48, unknown 197.9
2402 Female, age 67, both hemispheres 197.4
2283 Male, age 80, right hemisphere 196.8
1930 Female, age 42, unknown 183.6
2576 Male, age 74, both hemispheres 178.1
2492 Male, age 75, right hemisphere 173.8
2039 Female, age 72, unknown 166.1
2660 Female, age 72, unknown 124.3
Medial geniculate body
nTPM: 172.3
1811 Female, age 42, unknown 235.1
2650 Female, age 94, left hemisphere 200.9
2657 Male, age 74, right hemisphere 186.1
2207 Male, age 80, right hemisphere 161.9
2217 Female, age 72, unknown 149.8
2049 Male, age 76, both hemispheres 138.6
2571 Male, age 75, right hemisphere 133.8
Nucleus reuniens
nTPM: 162.2
2212 Female, age 67, left hemisphere 231.9
2205 Male, age 80, left hemisphere 146.2
2210 Female, age 85, left hemisphere 108.5
Nucleus rhomboideus
nTPM: 154.4
2206 Male, age 80, both hemispheres 208.0
2213 Female, age 67, left hemisphere 155.1
2280 Female, age 85, left hemisphere 100.1
Posterior thalamic nucleus
nTPM: 189.1
2649 Female, age 94, both hemispheres 228.3
2266 Male, age 76, right hemisphere 190.4
2495 Female, age 67, right hemisphere 174.4
2655 Male, age 74, right hemisphere 163.3
Pulvinar
nTPM: 201.4
1972 Male, age 62, unknown 245.7
1932 Male, age 80, right hemisphere 216.6
2398 Male, age 61, left hemisphere 214.8
1929 Male, age 48, unknown 205.6
1899 Female, age 42, unknown 201.7
2499 Male, age 66, unknown 200.9
2214 Male, age 76, right hemisphere 195.7
2496 Female, age 67, right hemisphere 190.7
2724 Male, age 74, right hemisphere 182.9
2582 Female, age 72, unknown 159.7
Subthalamic nucleus
nTPM: 167.7
2658 Male, age 74, both hemispheres 185.6
2275 Male, age 66, unknown 185.4
2406 Female, age 72, unknown 185.4
2124 Male, age 62, unknown 183.7
2282 Male, age 61, both hemispheres 177.2
2779 Female, age 42, unknown 154.0
2056 Female, age 72, unknown 149.1
2216 Male, age 48, unknown 121.5
Ventral posterolateral thalamic nucleus
nTPM: 181.1
2740 Male, age 76, right hemisphere 237.3
2397 Male, age 61, right hemisphere 208.0
2197 Male, age 80, both hemispheres 205.6
2570 Male, age 75, right hemisphere 169.6
2578 Male, age 74, both hemispheres 159.7
2581 Female, age 72, unknown 106.1
Ventral posteromedial thalamic nucleus
nTPM: 183.3
2202 Male, age 61, left hemisphere 239.0
2758 Male, age 80, both hemispheres 184.1
2653 Male, age 74, both hemispheres 170.9
2281 Male, age 75, right hemisphere 169.4
2127 Male, age 76, right hemisphere 153.5
Ventral thalamic nuclei
nTPM: 178.6
1845 Male, age 48, unknown 230.6
1860 Male, age 76, both hemispheres 225.6
1912 Female, age 42, unknown 188.7
2580 Male, age 66, unknown 184.5
2285 Male, age 62, unknown 175.2
2652 Male, age 74, left hemisphere 164.9
2204 Male, age 80, both hemispheres 152.0
2291 Female, age 72, unknown 151.4
2858 Female, age 72, unknown 134.6
Zona incerta
nTPM: 155.4
2215 Male, age 66, unknown 188.8
2822 Male, age 74, right hemisphere 170.4
2208 Male, age 80, right hemisphere 156.7
2403 Male, age 62, unknown 147.8
2663 Female, age 72, unknown 113.6

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

245.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 245.6
FF:10154-103A1 76 years, female 245.6

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

293.2
Pig sample Sample description nTPM
Thalamus
nTPM: 293.2
Samples: 4

Max nTPM: 372.7
Min nTPM: 210.7
Sample A Female 372.7
Sample B Female 232.6
Sample C Male 356.8
Sample D Male 210.7

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

286.3
Mouse sample Sample description nTPM
Thalamus
nTPM: 286.3
Samples: 4

Max nTPM: 330.3
Min nTPM: 254.1
Sample A Male 254.1
Sample B Male 330.3
Sample C Female 258.8
Sample D Female 302.1

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

12.9
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 12.9
69549024 Antisense, RP_050426_02_G06, Mouse strain C57BL/6J (56 days, male) 12.9

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