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BCAS3
HPA
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  • BCAS3
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

BCAS3
Synonyms FLJ20128, PHAF2
Gene descriptioni

Full gene name according to HGNC.

BCAS3 microtubule associated cell migration factor
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Disease related genes
Plasma proteins
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 17
Cytoband q23.2
Chromosome location (bp) 60677453 - 61392838
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

14
Ensembl ENSG00000141376 (version 109)
Entrez gene 54828
HGNC HGNC:14347
UniProt Q9H6U6 (UniProt - Evidence at protein level)
neXtProt NX_Q9H6U6
GeneCards BCAS3
Antibodypedia BCAS3 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Plays a role in angiogenesis. Participates in the regulation of cell polarity and directional endothelial cell migration by mediating both the activation and recruitment of CDC42 and the reorganization of the actin cytoskeleton at the cell leading edge. Promotes filipodia formation (By similarity). Functions synergistically with PELP1 as a transcriptional coactivator of estrogen receptor-responsive genes. Stimulates histone acetyltransferase activity. Binds to chromatin. Plays a regulatory role in autophagic activity. In complex with PHAF1, associates with the preautophagosomal structure during both non-selective and selective autophagy 1. Probably binds phosphatidylinositol 3-phosphate (PtdIns3P) which would mediate the recruitment preautophagosomal structures 2.... show less
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Angiogenesis, Transcription, Transcription regulation
Gene summary (Entrez)i

Useful information about the gene from Entrez

Enables several functions, including acetyltransferase activator activity; beta-tubulin binding activity; and histone acetyltransferase binding activity. Involved in cellular response to estrogen stimulus; positive regulation of catalytic activity; and positive regulation of transcription by RNA polymerase II. Located in nucleus; phagophore assembly site; and transcriptionally active chromatin. Biomarker of breast cancer. [provided by Alliance of Genome Resources, Apr 2022]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
BCAS3-201
ENSP00000375067
ENST00000390652
Q9H6U6
[Direct mapping] BCAS3 microtubule associated cell migration factor
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Disease related genes
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000407 [phagophore assembly site]
GO:0000791 [euchromatin]
GO:0001525 [angiogenesis]
GO:0003682 [chromatin binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0005856 [cytoskeleton]
GO:0005881 [cytoplasmic microtubule]
GO:0006914 [autophagy]
GO:0007030 [Golgi organization]
GO:0010595 [positive regulation of endothelial cell migration]
GO:0010698 [acetyltransferase activator activity]
GO:0016922 [nuclear receptor binding]
GO:0031023 [microtubule organizing center organization]
GO:0031252 [cell leading edge]
GO:0034260 [negative regulation of GTPase activity]
GO:0035035 [histone acetyltransferase binding]
GO:0035091 [phosphatidylinositol binding]
GO:0035148 [tube formation]
GO:0042393 [histone binding]
GO:0042594 [response to starvation]
GO:0043085 [positive regulation of catalytic activity]
GO:0043547 [positive regulation of GTPase activity]
GO:0043627 [response to estrogen]
GO:0045111 [intermediate filament cytoskeleton]
GO:0045944 [positive regulation of transcription by RNA polymerase II]
GO:0048487 [beta-tubulin binding]
GO:0051491 [positive regulation of filopodium assembly]
GO:0051895 [negative regulation of focal adhesion assembly]
GO:0071391 [cellular response to estrogen stimulus]
GO:0090316 [positive regulation of intracellular protein transport]
GO:0090630 [activation of GTPase activity]
GO:2000114 [regulation of establishment of cell polarity]
GO:2000251 [positive regulation of actin cytoskeleton reorganization]
Show all
928 aa
101.2 kDa
No 0
BCAS3-202
ENSP00000385323
ENST00000407086
Q9H6U6
[Direct mapping] BCAS3 microtubule associated cell migration factor
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Disease related genes
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000407 [phagophore assembly site]
GO:0000791 [euchromatin]
GO:0001525 [angiogenesis]
GO:0003682 [chromatin binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0005856 [cytoskeleton]
GO:0005881 [cytoplasmic microtubule]
GO:0006914 [autophagy]
GO:0007030 [Golgi organization]
GO:0010595 [positive regulation of endothelial cell migration]
GO:0010698 [acetyltransferase activator activity]
GO:0016922 [nuclear receptor binding]
GO:0031023 [microtubule organizing center organization]
GO:0031252 [cell leading edge]
GO:0034260 [negative regulation of GTPase activity]
GO:0035035 [histone acetyltransferase binding]
GO:0035091 [phosphatidylinositol binding]
GO:0035148 [tube formation]
GO:0042393 [histone binding]
GO:0042594 [response to starvation]
GO:0043085 [positive regulation of catalytic activity]
GO:0043547 [positive regulation of GTPase activity]
GO:0043627 [response to estrogen]
GO:0045111 [intermediate filament cytoskeleton]
GO:0045944 [positive regulation of transcription by RNA polymerase II]
GO:0048487 [beta-tubulin binding]
GO:0051491 [positive regulation of filopodium assembly]
GO:0051895 [negative regulation of focal adhesion assembly]
GO:0071391 [cellular response to estrogen stimulus]
GO:0090316 [positive regulation of intracellular protein transport]
GO:0090630 [activation of GTPase activity]
GO:2000114 [regulation of establishment of cell polarity]
GO:2000251 [positive regulation of actin cytoskeleton reorganization]
Show all
913 aa
99.7 kDa
No 0
BCAS3-203
ENSP00000386173
ENST00000408905
Q9H6U6
[Direct mapping] BCAS3 microtubule associated cell migration factor
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Disease related genes
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000407 [phagophore assembly site]
GO:0000791 [euchromatin]
GO:0001525 [angiogenesis]
GO:0003682 [chromatin binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0005856 [cytoskeleton]
GO:0005881 [cytoplasmic microtubule]
GO:0006914 [autophagy]
GO:0007030 [Golgi organization]
GO:0010595 [positive regulation of endothelial cell migration]
GO:0010698 [acetyltransferase activator activity]
GO:0016922 [nuclear receptor binding]
GO:0031023 [microtubule organizing center organization]
GO:0031252 [cell leading edge]
GO:0034260 [negative regulation of GTPase activity]
GO:0035035 [histone acetyltransferase binding]
GO:0035091 [phosphatidylinositol binding]
GO:0035148 [tube formation]
GO:0042393 [histone binding]
GO:0042594 [response to starvation]
GO:0043085 [positive regulation of catalytic activity]
GO:0043547 [positive regulation of GTPase activity]
GO:0043627 [response to estrogen]
GO:0045111 [intermediate filament cytoskeleton]
GO:0045944 [positive regulation of transcription by RNA polymerase II]
GO:0048487 [beta-tubulin binding]
GO:0051491 [positive regulation of filopodium assembly]
GO:0051895 [negative regulation of focal adhesion assembly]
GO:0071391 [cellular response to estrogen stimulus]
GO:0090316 [positive regulation of intracellular protein transport]
GO:0090630 [activation of GTPase activity]
GO:2000114 [regulation of establishment of cell polarity]
GO:2000251 [positive regulation of actin cytoskeleton reorganization]
Show all
935 aa
102.1 kDa
No 0
BCAS3-204
ENSP00000468682
ENST00000585744
K7ESE9
[Direct mapping] BCAS3 microtubule-associated cell migration factor
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0006914 [autophagy]
Show all
699 aa
75.8 kDa
No 0
BCAS3-209
ENSP00000466552
ENST00000586484
K7EML5
[Direct mapping] BCAS3 microtubule-associated cell migration factor
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0006914 [autophagy]
Show all
184 aa
19.8 kDa
No 0
BCAS3-210
ENSP00000465539
ENST00000586705
K7EKB0
[Direct mapping] BCAS3 microtubule-associated cell migration factor
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0006914 [autophagy]
Show all
145 aa
15.2 kDa
No 0
BCAS3-211
ENSP00000464711
ENST00000587002
K7EIE2
[Direct mapping] BCAS3 microtubule-associated cell migration factor
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
183 aa
20 kDa
No 0
BCAS3-216
ENSP00000465328
ENST00000588168
K7EJU7
[Direct mapping] BCAS3 microtubule-associated cell migration factor
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0006914 [autophagy]
Show all
135 aa
15 kDa
No 0
BCAS3-217
ENSP00000468592
ENST00000588462
Q9H6U6
[Direct mapping] BCAS3 microtubule associated cell migration factor
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Disease related genes
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000407 [phagophore assembly site]
GO:0000791 [euchromatin]
GO:0001525 [angiogenesis]
GO:0003682 [chromatin binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0005856 [cytoskeleton]
GO:0005881 [cytoplasmic microtubule]
GO:0006914 [autophagy]
GO:0007030 [Golgi organization]
GO:0010595 [positive regulation of endothelial cell migration]
GO:0010698 [acetyltransferase activator activity]
GO:0016922 [nuclear receptor binding]
GO:0031023 [microtubule organizing center organization]
GO:0031252 [cell leading edge]
GO:0034260 [negative regulation of GTPase activity]
GO:0035035 [histone acetyltransferase binding]
GO:0035091 [phosphatidylinositol binding]
GO:0035148 [tube formation]
GO:0042393 [histone binding]
GO:0042594 [response to starvation]
GO:0043085 [positive regulation of catalytic activity]
GO:0043547 [positive regulation of GTPase activity]
GO:0043627 [response to estrogen]
GO:0045111 [intermediate filament cytoskeleton]
GO:0045944 [positive regulation of transcription by RNA polymerase II]
GO:0048487 [beta-tubulin binding]
GO:0051491 [positive regulation of filopodium assembly]
GO:0051895 [negative regulation of focal adhesion assembly]
GO:0071391 [cellular response to estrogen stimulus]
GO:0090316 [positive regulation of intracellular protein transport]
GO:0090630 [activation of GTPase activity]
GO:2000114 [regulation of establishment of cell polarity]
GO:2000251 [positive regulation of actin cytoskeleton reorganization]
Show all
950 aa
103.7 kDa
No 0
BCAS3-221
ENSP00000464825
ENST00000588874
Q9H6U6
[Direct mapping] BCAS3 microtubule associated cell migration factor
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Disease related genes
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000407 [phagophore assembly site]
GO:0000791 [euchromatin]
GO:0001525 [angiogenesis]
GO:0003682 [chromatin binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0005856 [cytoskeleton]
GO:0005881 [cytoplasmic microtubule]
GO:0006914 [autophagy]
GO:0007030 [Golgi organization]
GO:0010595 [positive regulation of endothelial cell migration]
GO:0010698 [acetyltransferase activator activity]
GO:0016922 [nuclear receptor binding]
GO:0031023 [microtubule organizing center organization]
GO:0031252 [cell leading edge]
GO:0034260 [negative regulation of GTPase activity]
GO:0035035 [histone acetyltransferase binding]
GO:0035091 [phosphatidylinositol binding]
GO:0035148 [tube formation]
GO:0042393 [histone binding]
GO:0042594 [response to starvation]
GO:0043085 [positive regulation of catalytic activity]
GO:0043547 [positive regulation of GTPase activity]
GO:0043627 [response to estrogen]
GO:0045111 [intermediate filament cytoskeleton]
GO:0045944 [positive regulation of transcription by RNA polymerase II]
GO:0048487 [beta-tubulin binding]
GO:0051491 [positive regulation of filopodium assembly]
GO:0051895 [negative regulation of focal adhesion assembly]
GO:0071391 [cellular response to estrogen stimulus]
GO:0090316 [positive regulation of intracellular protein transport]
GO:0090630 [activation of GTPase activity]
GO:2000114 [regulation of establishment of cell polarity]
GO:2000251 [positive regulation of actin cytoskeleton reorganization]
Show all
684 aa
74.2 kDa
No 0
BCAS3-222
ENSP00000466078
ENST00000589222
Q9H6U6
[Direct mapping] BCAS3 microtubule associated cell migration factor
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Disease related genes
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000407 [phagophore assembly site]
GO:0000791 [euchromatin]
GO:0001525 [angiogenesis]
GO:0003682 [chromatin binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0005856 [cytoskeleton]
GO:0005881 [cytoplasmic microtubule]
GO:0006914 [autophagy]
GO:0007030 [Golgi organization]
GO:0010595 [positive regulation of endothelial cell migration]
GO:0010698 [acetyltransferase activator activity]
GO:0016922 [nuclear receptor binding]
GO:0031023 [microtubule organizing center organization]
GO:0031252 [cell leading edge]
GO:0034260 [negative regulation of GTPase activity]
GO:0035035 [histone acetyltransferase binding]
GO:0035091 [phosphatidylinositol binding]
GO:0035148 [tube formation]
GO:0042393 [histone binding]
GO:0042594 [response to starvation]
GO:0043085 [positive regulation of catalytic activity]
GO:0043547 [positive regulation of GTPase activity]
GO:0043627 [response to estrogen]
GO:0045111 [intermediate filament cytoskeleton]
GO:0045944 [positive regulation of transcription by RNA polymerase II]
GO:0048487 [beta-tubulin binding]
GO:0051491 [positive regulation of filopodium assembly]
GO:0051895 [negative regulation of focal adhesion assembly]
GO:0071391 [cellular response to estrogen stimulus]
GO:0090316 [positive regulation of intracellular protein transport]
GO:0090630 [activation of GTPase activity]
GO:2000114 [regulation of establishment of cell polarity]
GO:2000251 [positive regulation of actin cytoskeleton reorganization]
Show all
928 aa
101.5 kDa
No 0
BCAS3-224
ENSP00000465175
ENST00000590128
K7EJH7
[Direct mapping] BCAS3 microtubule-associated cell migration factor
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0006914 [autophagy]
Show all
178 aa
19.1 kDa
No 0
BCAS3-233
ENSP00000486318
ENST00000626960
K7EQA6
[Direct mapping] BCAS3 microtubule-associated cell migration factor
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
53 aa
5.8 kDa
No 0
BCAS3-234
ENSP00000492306
ENST00000639611
K7EIR7
[Direct mapping] BCAS3 microtubule-associated cell migration factor
Show all
   DeepTMHMM predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
36 aa
3.9 kDa
No 0

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