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GALNT1
HPA
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  • GALNT1
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

GALNT1
Synonyms GalNAc-T1
Gene descriptioni

Full gene name according to HGNC.

Polypeptide N-acetylgalactosaminyltransferase 1
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Enzymes
Metabolic proteins
Plasma proteins
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane, Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 18
Cytoband q12.2
Chromosome location (bp) 35581117 - 35711834
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

3
Ensembl ENSG00000141429 (version 109)
Entrez gene 2589
HGNC HGNC:4123
UniProt Q10472 (UniProt - Evidence at protein level)
neXtProt NX_Q10472
GeneCards GALNT1
Antibodypedia GALNT1 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor 1, 2. Has a broad spectrum of substrates such as apomucin-, MUC5AC-, MUC1- and MUC2-derived peptides 3.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Glycosyltransferase, Transferase
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

Lectin, Manganese, Metal-binding
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a member of the UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase (GalNAc-T) family of enzymes. GalNAc-Ts initiate mucin-type O-linked glycosylation in the Golgi apparatus by catalyzing the transfer of GalNAc to serine and threonine residues on target proteins. They are characterized by an N-terminal transmembrane domain, a stem region, a lumenal catalytic domain containing a GT1 motif and Gal/GalNAc transferase motif, and a C-terminal ricin/lectin-like domain. GalNAc-Ts have different, but overlapping, substrate specificities and patterns of expression. Transcript variants derived from this gene that utilize alternative polyA signals have been described in the literature. [provided by RefSeq, Jul 2008]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
GALNT1-201
ENSP00000269195
ENST00000269195
Q10472
[Direct mapping] Polypeptide N-acetylgalactosaminyltransferase 1 Polypeptide N-acetylgalactosaminyltransferase 1 soluble form
Show all
A0A024RC48
[Target identity:100%; Query identity:100%] Polypeptide N-acetylgalactosaminyltransferase
Show all
Enzymes
   ENZYME proteins
   Transferases
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0000139 [Golgi membrane]
GO:0004653 [polypeptide N-acetylgalactosaminyltransferase activity]
GO:0005576 [extracellular region]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005794 [Golgi apparatus]
GO:0006486 [protein glycosylation]
GO:0006493 [protein O-linked glycosylation]
GO:0016020 [membrane]
GO:0016266 [O-glycan processing]
GO:0016740 [transferase activity]
GO:0016757 [glycosyltransferase activity]
GO:0018242 [protein O-linked glycosylation via serine]
GO:0018243 [protein O-linked glycosylation via threonine]
GO:0019082 [viral protein processing]
GO:0030145 [manganese ion binding]
GO:0030246 [carbohydrate binding]
GO:0032580 [Golgi cisterna membrane]
GO:0033116 [endoplasmic reticulum-Golgi intermediate compartment membrane]
GO:0046872 [metal ion binding]
GO:0048471 [perinuclear region of cytoplasm]
Show all
559 aa
64.2 kDa
No 1
GALNT1-205
ENSP00000466411
ENST00000591081
Q10472
[Direct mapping] Polypeptide N-acetylgalactosaminyltransferase 1 Polypeptide N-acetylgalactosaminyltransferase 1 soluble form
Show all
Enzymes
   ENZYME proteins
   Transferases
Metabolic proteins
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   SPOCTOPUS predicted secreted proteins
   DeepTMHMM predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000139 [Golgi membrane]
GO:0004653 [polypeptide N-acetylgalactosaminyltransferase activity]
GO:0005576 [extracellular region]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005794 [Golgi apparatus]
GO:0006486 [protein glycosylation]
GO:0006493 [protein O-linked glycosylation]
GO:0016020 [membrane]
GO:0016266 [O-glycan processing]
GO:0016740 [transferase activity]
GO:0016757 [glycosyltransferase activity]
GO:0018242 [protein O-linked glycosylation via serine]
GO:0018243 [protein O-linked glycosylation via threonine]
GO:0019082 [viral protein processing]
GO:0030145 [manganese ion binding]
GO:0030246 [carbohydrate binding]
GO:0032580 [Golgi cisterna membrane]
GO:0033116 [endoplasmic reticulum-Golgi intermediate compartment membrane]
GO:0046872 [metal ion binding]
GO:0048471 [perinuclear region of cytoplasm]
Show all
105 aa
12 kDa
No 0
GALNT1-206
ENSP00000465699
ENST00000591924
Q10472
[Direct mapping] Polypeptide N-acetylgalactosaminyltransferase 1 Polypeptide N-acetylgalactosaminyltransferase 1 soluble form
Show all
Enzymes
   ENZYME proteins
   Transferases
Metabolic proteins
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   SPOCTOPUS predicted secreted proteins
   DeepTMHMM predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000139 [Golgi membrane]
GO:0004653 [polypeptide N-acetylgalactosaminyltransferase activity]
GO:0005576 [extracellular region]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005794 [Golgi apparatus]
GO:0006486 [protein glycosylation]
GO:0006493 [protein O-linked glycosylation]
GO:0016020 [membrane]
GO:0016266 [O-glycan processing]
GO:0016740 [transferase activity]
GO:0016757 [glycosyltransferase activity]
GO:0018242 [protein O-linked glycosylation via serine]
GO:0018243 [protein O-linked glycosylation via threonine]
GO:0019082 [viral protein processing]
GO:0030145 [manganese ion binding]
GO:0030246 [carbohydrate binding]
GO:0032580 [Golgi cisterna membrane]
GO:0033116 [endoplasmic reticulum-Golgi intermediate compartment membrane]
GO:0046872 [metal ion binding]
GO:0048471 [perinuclear region of cytoplasm]
Show all
105 aa
12 kDa
No 0

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