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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: Not detected
Enterocytes: Not detected
Enterocytes - Microvilli: High
Goblet cells: Not detected
Paneth cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:353.8 nTPM
HPA:353.8 nTPM
GTEx:76.6 nTPM
FANTOM5:1860.3 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA029119
Endocrine cells Not detected
Enterocytes Not detected
Enterocytes - Microvilli High
Goblet cells Not detected
Paneth cells Not detected



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

353.8
overview
Male, age 65
Small intestine sample 232
nTPM: 310.2
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 481.5
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 272.7
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 350.9

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

76.6
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 76.6
Samples: 187

Max nTPM: 505.3
Min nTPM: 0.0
Std nTPM: 106.1
Median nTPM: 26.4
GTEX-111YS-1426-SM-5GID8 60-69 years, male 505.3
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 475.9
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 472.2
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 378.2
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 373.3
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 343.1
GTEX-YFCO-1326-SM-664NV 40-49 years, male 341.3
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 325.9
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 317.9
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 315.2
GTEX-ZTSS-0926-SM-59865 40-49 years, male 267.9
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 251.9
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 245.0
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 244.9
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 244.7
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 237.9
GTEX-14PN3-2026-SM-68729 60-69 years, female 237.8
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 231.1
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 229.3
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 222.0
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 214.5
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 213.3
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 211.2
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 209.0
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 207.4
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 206.8
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 205.5
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 200.5
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 198.1
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 197.1
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 191.6
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 189.0
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 182.7
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 177.6
GTEX-1122O-1326-SM-5H11F 60-69 years, female 172.2
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 167.5
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 166.9
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 164.8
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 163.1
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 162.2
GTEX-13113-1226-SM-5EGHT 60-69 years, female 157.5
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 150.8
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 150.2
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 137.7
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 135.3
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 131.4
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 129.1
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 117.6
GTEX-144GM-1026-SM-79OKU 20-29 years, male 110.2
GTEX-1C475-1426-SM-793CH 40-49 years, female 109.4
GTEX-14PK6-1626-SM-6871I 70-79 years, female 103.8
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 103.1
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 103.1
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 97.9
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 95.8
GTEX-14PKU-1626-SM-6871C 40-49 years, female 92.2
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 89.0
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 81.7
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 81.4
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 79.5
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 78.0
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 76.3
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 71.9
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 69.1
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 66.5
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 66.1
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 64.6
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 64.5
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 63.3
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 60.4
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 57.7
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 56.8
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 54.4
GTEX-13O61-1326-SM-5KM31 60-69 years, male 53.7
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 52.4
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 51.8
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 50.8
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 49.2
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 48.2
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 47.9
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 45.2
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 44.8
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 44.7
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 43.8
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 39.9
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 39.5
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 38.1
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 37.5
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 34.3
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 33.7
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 27.7
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 26.9
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 26.5
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 26.4
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 24.9
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 23.7
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 21.1
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 17.0
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 15.5
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 15.3
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 14.5
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 14.2
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 12.6
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 12.4
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 11.7
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 9.9
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 9.8
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 8.5
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 7.4
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 6.8
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 5.7
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 5.2
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 4.9
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 4.8
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 4.6
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 4.0
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 3.7
GTEX-117YX-0326-SM-5GICL 50-59 years, male 3.4
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 2.7
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 2.4
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 2.4
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 2.3
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 2.1
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 2.1
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 1.7
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 1.7
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 1.7
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 1.5
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 1.4
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 1.2
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 1.1
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 1.0
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 0.8
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 0.7
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 0.7
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 0.7
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 0.6
GTEX-183FY-1626-SM-793D8 20-29 years, male 0.5
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 0.5
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 0.5
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 0.5
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 0.4
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 0.4
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 0.4
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 0.3
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 0.3
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 0.3
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 0.3
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 0.3
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 0.3
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 0.3
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 0.3
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 0.2
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 0.2
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 0.2
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 0.2
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 0.2
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 0.2
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 0.2
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 0.2
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 0.2
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 0.2
GTEX-13111-1426-SM-5DUW3 50-59 years, male 0.1
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 0.1
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 0.1
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 0.1
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 0.1
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 0.1
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 0.1
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 0.1
GTEX-1192X-2526-SM-59868 50-59 years, male 0.0
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 0.0
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 0.0
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 0.0
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 0.0
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 0.0
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 0.0
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 0.0
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 0.0
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 0.0
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 0.0
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 0.0
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 0.0
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 0.0
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 0.0
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 0.0
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 0.0
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1860.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 1860.3
FF:10024-101D6 15,40,85 years, mixed 1860.3

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